PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT08719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 360aa MW: 41158.7 Da PI: 6.6207 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 223.2 | 1.3e-68 | 2 | 359 | 12 | 374 |
GRAS 12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fse..vsPilkfshltaNqaIlea 105 v+++++ +a ++L+ ++ as +g+p+qR++ yf+ AL++++ r+ ++ + + ++ +n ++e ++ l f + ++P+ + + +t qaIl++ OIT08719 2 VATRKFDRAIKFLSLCNQSASATGTPVQRVVYYFADALQHKIDREIGKMPITREEDIETYSNdVEELVMD--LqpavFAKrpLFPYRQATSFTGIQAILDS 100 7889999*************************************55544433333222222223333333..23466654449****************** PP GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfA.eelgvpfefnvlvakrledleleeLrvkpgEalaV 204 +++++rvH iD+ i+ G +W++++q+La+R+e p +l+i +vg+ sk+++e +g+rL+ fA e+l+v+f+fn+ v+++l +l++e+++v+ +E++aV OIT08719 101 IKTAKRVHLIDLCIKSGSHWATFMQTLADRDECPLkHLKISVVGR----SKKKMEDVGRRLSAFAaETLNVSFSFNT-VVSDLRNLKTESFEVEADEVVAV 196 *******************************65544*********....9**************73679********.7999******************* PP GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305 + + l ++l+ + +++s +++++k+l+P +vv++e a++ ++F + f e+l+y+sal d+ e+ ++ +E +++++ i+n+++c+ ++ OIT08719 197 YSDVILWTMLAWPNDMDS----LMEVIKGLNPCIVVLIEGIANTYLPDFIDSFNETLSYFSALTDCSEVL----HKGIPIYEGFYIQKVIRNMITCKSQKN 289 *********966666666....**********************************************99....89999********************** PP GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + rh +l+ Wr+ + ++ + + ls+ +a+ll k + + + e +++ lv+ Wk+ p++ vSaW+ OIT08719 290 VPRHGNLKVWRDLFAKFDMVETDLSHLSLIEASLLFDKSEfRRLCTCELDEKFLVISWKRTPMICVSAWK 359 ****************************************8888999**********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence |
LVATRKFDRA IKFLSLCNQS ASATGTPVQR VVYYFADALQ HKIDREIGKM PITREEDIET 60 YSNDVEELVM DLQPAVFAKR PLFPYRQATS FTGIQAILDS IKTAKRVHLI DLCIKSGSHW 120 ATFMQTLADR DECPLKHLKI SVVGRSKKKM EDVGRRLSAF AAETLNVSFS FNTVVSDLRN 180 LKTESFEVEA DEVVAVYSDV ILWTMLAWPN DMDSLMEVIK GLNPCIVVLI EGIANTYLPD 240 FIDSFNETLS YFSALTDCSE VLHKGIPIYE GFYIQKVIRN MITCKSQKNV PRHGNLKVWR 300 DLFAKFDMVE TDLSHLSLIE ASLLFDKSEF RRLCTCELDE KFLVISWKRT PMICVSAWKF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-39 | GRAS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT08719 |