PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08646
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 437aa    MW: 49397.6 Da    PI: 7.0719
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08646genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
         OIT08646 106 KGQWTDEEDRKLLRLVKQFGVRKWAQIAEKMD-ARAGKQCRERWHNHL 152
                      799*****************************.*************97 PP
2Myb_DNA-binding58.91.2e-18158200145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eE++llv+a+kqlG++ W+ Ia+++  gRt++++k++w+
         OIT08646 158 KDTWSEEEELLLVEAHKQLGNK-WADIAKRID-GRTENSIKNHWN 200
                      679*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    
MEGGSSAFRP YQNLPKNYLG STPPFTAIDR FLLSHENYFY PLSSSSSHAN GVSWPKSLPE  60
PCFIEEFFLN EQEKGLIEDA KSVQKNKRES GKKAKEASST SNYLVKGQWT DEEDRKLLRL  120
VKQFGVRKWA QIAEKMDARA GKQCRERWHN HLRPDIKKDT WSEEEELLLV EAHKQLGNKW  180
ADIAKRIDGR TENSIKNHWN ATKRRMNSRR NKKRKNQQDD QNERKNRSNI LQDYIRSVCF  240
ADDSPLTTAT YHCGGGFGGG GGCSSTTTTV TQSTSTITNA TLTYSDDDSP SFLTHQTCDE  300
EMNFMQNLFG KNSLLSDNNG TKAIDHSMEA KVTQNLFDNN SSISNSAFNS FGENLLSKGQ  360
EAQLQYSQHF CPDVYLPYLL DGSSYNPECF GYGNNMNMQM NQATGCSSGG NNKVEVDLME  420
LVSSSHFSQG TYNNTFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203214KRRMNSRRNKKR
2209215RRNKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-61MYB family protein