PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT08620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 180aa MW: 19889.4 Da PI: 7.902 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 84.3 | 2.9e-26 | 17 | 156 | 6 | 118 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec.eaesssssasnsssg.............. 88 +r+ ++h kv+g+dRR+Rl+ +ca r+F L+++LG+++ + tieWLl qa+ +i ++ ++s+ +++ ++ss s+s+++++ OIT08620 17 TRTRDRHLKVNGKDRRIRLPTSCAQRVFSLTEKLGHKTVGCTIEWLLMQAESSINAILAKKTSALpspERVpPVVESSISTSTHRNRnglppfvfchglel 117 79******************************************************999944433222223533333333333333347888888888888 PP TCP 89 ...................kaaksaakskksqksaasalnlakesraka 118 + ++ +++ ++++ n es++k OIT08620 118 gdmefsreeierfastntsS---ESV-GSSLPAQH---MN---ESNEKN 156 88888877665554432210...111.11111111...11...222111 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence |
MDASPPPPPP PGNRPSTRTR DRHLKVNGKD RRIRLPTSCA QRVFSLTEKL GHKTVGCTIE 60 WLLMQAESSI NAILAKKTSA LPSPERVPPV VESSISTSTH RNRNGLPPFV FCHGLELGDM 120 EFSREEIERF ASTNTSSESV GSSLPAQHMN ESNEKNCSSE VEEKIGANEE KKNATCVQFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G58100.1 | 6e-19 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT08620 |