PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08610

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 450aa MW: 48832 Da PI: 5.2522

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08610	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	37	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l d+v ++G g+W+++ + g+ R++k+c++rw ++l OIT08610 37 KGPWTSAEDAILMDYVMKHGEGNWNAVQKQSGLARCGKSCRLRWANHL 84 79******************************************9986 PP
2	Myb_DNA-binding	52.1	1.6e-16	90	133	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++v++++++G++ W++ a++++ gRt++++k++w++ OIT08610 90 KGAFTPEEERQIVELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MSITIETNDM MTSKVDVDSP DEATGGVNAG GSEPLKKGPW TSAEDAILMD YVMKHGEGNW 60 NAVQKQSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEERQ IVELHAKMGN KWARMAAELP 120 GRTDNEIKNY WNTRIKRHQR AGLPVYPPDI CFLASQNKQN EELSAFSSAD AQNPDVSGTN 180 NFDIPAVEFK NLELNRPLYP PPLFEIPSNS LLDITVSSFL AQGHSPPYNS TSFLSTMHPS 240 KRIRGSESVF FGSNGGSLLG QPLGFSSYNN HNVTYDDHRP FSSIVIPGSH APLNGNSSSS 300 EELPSLQNQT ANWGPPSSPF PSLESVDTLI QSPPAGHSES GSDLSPRNSG LLDAMLYGSQ 360 TMKASTHNSH QENETFGDAV DNYYGDPLSP LSHFTASAFS EYAPIDGSSL HEFPSLATMP 420 GCKVKQENVA TSSGQACGRD SCAWDAMSAM

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MSITIETNDM MTSKVDVDSP DEATGGVNAG GSEPLKKGPW TSAEDAILMD YVMKHGEGNW  60
NAVQKQSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEERQ IVELHAKMGN KWARMAAELP  120
GRTDNEIKNY WNTRIKRHQR AGLPVYPPDI CFLASQNKQN EELSAFSSAD AQNPDVSGTN  180
NFDIPAVEFK NLELNRPLYP PPLFEIPSNS LLDITVSSFL AQGHSPPYNS TSFLSTMHPS  240
KRIRGSESVF FGSNGGSLLG QPLGFSSYNN HNVTYDDHRP FSSIVIPGSH APLNGNSSSS  300
EELPSLQNQT ANWGPPSSPF PSLESVDTLI QSPPAGHSES GSDLSPRNSG LLDAMLYGSQ  360
TMKASTHNSH QENETFGDAV DNYYGDPLSP LSHFTASAFS EYAPIDGSSL HEFPSLATMP  420
GCKVKQENVA TSSGQACGRD SCAWDAMSAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	2e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT08610