PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT08607 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 21905.1 Da PI: 8.8428 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.7 | 4.7e-11 | 22 | 50 | 21 | 49 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyey 49 l KA+EL++LC+ae+a+++fs+ k+y + OIT08607 22 LQKASELCTLCGAEIALVVFSPGKKVYSF 50 68*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence |
MAKRSKGRQK VDMVKMHNES NLQKASELCT LCGAEIALVV FSPGKKVYSF GHPCVDSVVD 60 RFLTRNSPPN NDHNQLIVAH RNASVRDLNM ELMNIEGILQ MEKNRGEALQ ARKRDNGHWW 120 EAPIEELNFF QLQQLKEAME CIKKKVEREA QNQQMVTGNA FPFLTFGSAL APTDARARSS 180 YGSCGSFPFC LTKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-48 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT08607 |