PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08569

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 557aa MW: 60315.5 Da PI: 6.2034

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08569	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.5e-16	352	398	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq OIT08569 352 VHNLSERRRRDRINEKMRALQELIPRC-----NKTDKASMLDEAIEYLKSLQ 398 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MNHSVPDFDM DDDYTIPTSS GLTRPKKSAM AEEDIMELLW HNGQVVMQSQ NQRSRKKSHI 60 TNGGGGGGSG DALIPSEQAV SREIRHVEET TTPQQLFMQE DEMASWLHYP LDDSSSFERD 120 LYADLLYSTP SATVTTAAPP REIHTPTVEI RPPPPQPSPA APITVAPRPP IPPPARRPGT 180 ESSHRFQNFG HFSRLPSRTR SELGPSNSSK SPRESTVVDS NETPISGPES RVSHVADNVV 240 PVPGGNVACG TVNVNGTVTA STAIIEPATT CELSMTSSPG SGNSINASAE PPSSQTAALA 300 TPTAAASNDR KRKGIETDDG DGQNEDAEFE SGDTKKHARG STSTKRSRAA EVHNLSERRR 360 RDRINEKMRA LQELIPRCNK TDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPMMYPGMQQ 420 YMPAMGMGMV GMGMEIGMNR PMVPYQPLLP GAAMQNAAAA AQMGPRFPMA PFHLPPVPVP 480 DPSRMQASSQ QDPMLNPLVA RNPNQQRLPN INDPYQQFFG LHQAQVQLPQ NQAVEQQGYN 540 KPGSSKEVGN PGNPQSG

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MNHSVPDFDM DDDYTIPTSS GLTRPKKSAM AEEDIMELLW HNGQVVMQSQ NQRSRKKSHI  60
TNGGGGGGSG DALIPSEQAV SREIRHVEET TTPQQLFMQE DEMASWLHYP LDDSSSFERD  120
LYADLLYSTP SATVTTAAPP REIHTPTVEI RPPPPQPSPA APITVAPRPP IPPPARRPGT  180
ESSHRFQNFG HFSRLPSRTR SELGPSNSSK SPRESTVVDS NETPISGPES RVSHVADNVV  240
PVPGGNVACG TVNVNGTVTA STAIIEPATT CELSMTSSPG SGNSINASAE PPSSQTAALA  300
TPTAAASNDR KRKGIETDDG DGQNEDAEFE SGDTKKHARG STSTKRSRAA EVHNLSERRR  360
RDRINEKMRA LQELIPRCNK TDKASMLDEA IEYLKSLQLQ VQMMSMGCGM VPMMYPGMQQ  420
YMPAMGMGMV GMGMEIGMNR PMVPYQPLLP GAAMQNAAAA AQMGPRFPMA PFHLPPVPVP  480
DPSRMQASSQ QDPMLNPLVA RNPNQQRLPN INDPYQQFFG LHQAQVQLPQ NQAVEQQGYN  540
KPGSSKEVGN PGNPQSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	362	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT08569