PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT08543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 29521.3 Da PI: 7.9823 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.5 | 1.8e-14 | 14 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l+++ ++G+ +W t +++ g++R +k+c++rw++yl OIT08543 14 RGKWSPEEDEILKNYLLKHGTTagNWITLPHRAGLKRWGKSCRLRWLNYL 63 89********************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 70 | 112 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd ++ + +qlG++ W+ Ia++++ gRt++++k++w++ OIT08543 70 GNFTQEEDNIICSLYTQLGSR-WSVIASKLP-GRTDNDVKNHWNT 112 79*******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MGRTPCCDKT KVKRGKWSPE EDEILKNYLL KHGTTAGNWI TLPHRAGLKR WGKSCRLRWL 60 NYLRPDIKLG NFTQEEDNII CSLYTQLGSR WSVIASKLPG RTDNDVKNHW NTKLKKKLLA 120 TNANPTNNFD DSKQVFHSSS MVPKEEEQQA VYSPIQFPVP NWNSGFSSIL DNNKSMVQHD 180 EKQFPLSRFR QDYFKISTSR EGSMIFGSSS VEMHENIDLA WFNTFEGFPM DDEIMGAGLW 240 TQQSVLEDID FPVTFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 9e-56 | MYB family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT08543 |