PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT08352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 214aa MW: 25138.4 Da PI: 8.2075 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.5 | 2.6e-16 | 4 | 47 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +r+v + R++ ++KKA ELSvLC++e+ +++fs++ k ey OIT08352 4 ECRRSVVLKERLEALFKKADELSVLCGVEIGIVVFSPDKKNDEY 47 679**********************************9886555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
LVDECRRSVV LKERLEALFK KADELSVLCG VEIGIVVFSP DKKNDEYEWP SRDKFKQLLM 60 RFLDTPPVER LKKLTTNEMF LRKEMEKTVR KIDQQKIEEK EMEQLFKQLY FGEKTVFELD 120 KRQLIGVRNL AIKVKENAVE RRIQLKLQDQ RLLVPIDPVP LRVAPLNIED RHQHLQLPID 180 DPLALRLAPL DVQDQRFQLP VDDPLALRLA PPGN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 4e-16 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT08352 |