PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08035
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 551aa    MW: 62793 Da    PI: 6.1136
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08035genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.17.5e-901815492374
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqa 101
                + Ll++Ae vs+++  +a+++L++ + +as++g+p qR+++yf++AL++r+ r++ +l+ + +++++ +   ++++ a +l f++  P+ ++ h+t  qa
  OIT08035 181 AQILLAAAEKVSDQQYDRARKMLSQCQPHASNTGNPAQRAVFYFAQALEERIDRETGRLMPKPRVERDGSICIASRFDASHLeFHQEVPFTQVVHFTGIQA 281
               689***************************************************66666655555555544477777787878****************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
               +le+v+++++vH iDf i  G+QW++L+qa a+R+ ++  +++iT+++s   ++ke++eetg+ L++fA++l+ p++f+++   + ++l+ ++++++p+E 
  OIT08035 282 MLESVATKSKVHLIDFLIRTGVQWASLIQAAAERKdNPIEHMKITVIES---VNKERVEETGKSLESFAKSLNFPLSFKIVFLPDRNQLTENHFDIEPDEG 379
               **********************************955566*********...78**************************9999***************** PP

      GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
               l++  ++ l  +  e+ +le      +++v++l+P+++vv+e ea++ns+ F++rf+++l yysa+fd+le  + r++++r+++E +  g  i n+v  eg
  OIT08035 380 LVIYAAFFLRAMICEPNCLET----AMRVVRKLQPELMVVSEVEANLNSPMFVNRFIDSLFYYSAFFDCLEDVMKRDDQHRMTLESVTYGSGIWNIVGSEG 476
               *************88888888....**************************************************************************** PP

      GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +er+ r  +l  Wr  ++++G+++v+lse+   qa+l++++++  +  + + + gsl+  Wk+ p++s+SaW+
  OIT08035 477 KERVCRSVNLDVWRTFFKRFGMEEVKLSETCLYQANLIIQQFArRNSCSADVNGGSLTVSWKGTPIYSTSAWK 549
               *******************************************7777889999*******************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    
MANPSFHLAS FTSNQIPGSD SSLRGCRDDT AKSYNQLSVM EDSADIQNFC TNSGFYQEYA  60
VNPQVQEMNK QQEEMNVYAV TPQVQTGSHV DNTPFLYLAP FELLRNNPSR CKNTEGDKVR  120
NMNNRTNAYQ KLSAMQIMRL AGERFIQFSS NKFININNLL HPYGSALSNL SQEDNQDVEL  180
AQILLAAAEK VSDQQYDRAR KMLSQCQPHA SNTGNPAQRA VFYFAQALEE RIDRETGRLM  240
PKPRVERDGS ICIASRFDAS HLEFHQEVPF TQVVHFTGIQ AMLESVATKS KVHLIDFLIR  300
TGVQWASLIQ AAAERKDNPI EHMKITVIES VNKERVEETG KSLESFAKSL NFPLSFKIVF  360
LPDRNQLTEN HFDIEPDEGL VIYAAFFLRA MICEPNCLET AMRVVRKLQP ELMVVSEVEA  420
NLNSPMFVNR FIDSLFYYSA FFDCLEDVMK RDDQHRMTLE SVTYGSGIWN IVGSEGKERV  480
CRSVNLDVWR TFFKRFGMEE VKLSETCLYQ ANLIIQQFAR RNSCSADVNG GSLTVSWKGT  540
PIYSTSAWKF H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-54GRAS family protein