PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08034
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 571aa    MW: 65227.8 Da    PI: 5.0044
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08034genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS295.31.6e-901995691374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevsPilkfsh 95 
               lv+lLl++Ae v++++++la++l++r    as++g+p+qRl +yf++AL++r+ r  ++ y   ++++++++          + +a+ + +++ P+ ++ +
  OIT08034 199 LVHLLLSAAEEVNNQQFHLARKLISRCMWVASESGNPVQRLSFYFAKALEERIDR-ATGRY---TCTDEDRHLkyiktmALGTNSAFLICHQLLPFSQVMQ 295
               68*****************************************************.33333...222222222122222333334445589********** PP

      GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
               ++  q+Ile v +++++H iDf+i  G+QW  ++qaLa+++  +   l+iT+vgs   ++ke+ e tg+ L++fA++lg++f+f+++  ++++d++ e+ +
  OIT08034 296 FAGVQTILENVRSAKKIHLIDFNIRSGIQWTVMMQALAEKSdYPIELLKITAVGS---TEKEKFEVTGNTLHSFATSLGLSFSFDIVFLSDMKDFKKESVN 393
               ****************************************9566679********...579**************************************** PP

      GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
               ++p+E++aV +   l ++  ++ +le+    ++k+v+s+ P+v+v+ e ea+hns+sFl+rf+e+l +y  +fd++e+ + r+s  r+++E  ++g+ i+n
  OIT08034 394 IEPDETVAVYCNTVLRTMIPKPDCLEN----FMKVVRSIGPTVIVIGEVEANHNSPSFLNRFIETLFFYGGFFDCFEECMDRDSPCRRTIEGLYFGEGIRN 490
               *******************99999999....********************************************************************** PP

      GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
               +va+eg+er+ r+ +le Wr+ ++++G+ + ++se+a  qa+l+l++++ +   +++++ + l++gWk+ p+ s+S W+
  OIT08034 491 IVAAEGKERFTRNVKLEVWRAFFSRFGMVEEEFSESAWYQANLILKQFAqGSCCNLHKDGKGLIIGWKGTPIHSLSIWK 569
               *************************************************77779************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    
MANVSISNDN FTDEHFRNEL VVEDPWFELE DCADIHSVYS MCNEENTSNE QVTTNLFQDQ  60
QQSISNWMQS QFSTNTHQIQ SSIEEPKNDD FQPQVLQLIG NSSNERSIPF SLASFELLNN  120
YGRLIKKSSE ENLSINNALT YEARACNNHK LSTEETLKVA GERYIQYSTQ KLDGLSLFMH  180
PYGSALSGLS IEETRDMELV HLLLSAAEEV NNQQFHLARK LISRCMWVAS ESGNPVQRLS  240
FYFAKALEER IDRATGRYTC TDEDRHLKYI KTMALGTNSA FLICHQLLPF SQVMQFAGVQ  300
TILENVRSAK KIHLIDFNIR SGIQWTVMMQ ALAEKSDYPI ELLKITAVGS TEKEKFEVTG  360
NTLHSFATSL GLSFSFDIVF LSDMKDFKKE SVNIEPDETV AVYCNTVLRT MIPKPDCLEN  420
FMKVVRSIGP TVIVIGEVEA NHNSPSFLNR FIETLFFYGG FFDCFEECMD RDSPCRRTIE  480
GLYFGEGIRN IVAAEGKERF TRNVKLEVWR AFFSRFGMVE EEFSESAWYQ ANLILKQFAQ  540
GSCCNLHKDG KGLIIGWKGT PIHSLSIWKF L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-56GRAS family protein