PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08013

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 448aa MW: 50116.1 Da PI: 5.7273

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08013	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	253	300	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OIT08013 253 SHSLAERVRREKISERMRFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 300 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MNIALPEMLH SITGNGGNGS SEMSVLERQR TRMKWQQEQL QQPEMMSYFD EQNDHQLMHS 60 YSQTAGAQQF HGLINNVNDQ SLNELVTRAI KPDPCLESNW GDFGTIGTDG LGYVPIGVGN 120 GGTTPQLGLD YAISRTTSCP PNMADNVVSV GKAKESMLSS NRGRESFKKR KADKNQHLKE 180 VAEEETKDKK MKECIEEGDS KVTTEKYNNK RSSNNSNNSK ESSESSKEKS KITEDKKPDY 240 IHVRARRGQA TDSHSLAERV RREKISERMR FLQDLVPGCN KITGKAGMLD EIINYVQSLQ 300 RQVEFLSMKL AAVNPRLDID IDNFFNKDIF ATSTSNFPTV GAGTSSEMLS MAQRQFNSLQ 360 QIVSSSGFEM GILNLSEMAL RRTTSAPVSI PEIFLDSSNI NQVQSFPTWD TELDNMYAME 420 LQQGRSAQFL PHPCTGFVEA GNDLKMEM

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MNIALPEMLH SITGNGGNGS SEMSVLERQR TRMKWQQEQL QQPEMMSYFD EQNDHQLMHS  60
YSQTAGAQQF HGLINNVNDQ SLNELVTRAI KPDPCLESNW GDFGTIGTDG LGYVPIGVGN  120
GGTTPQLGLD YAISRTTSCP PNMADNVVSV GKAKESMLSS NRGRESFKKR KADKNQHLKE  180
VAEEETKDKK MKECIEEGDS KVTTEKYNNK RSSNNSNNSK ESSESSKEKS KITEDKKPDY  240
IHVRARRGQA TDSHSLAERV RREKISERMR FLQDLVPGCN KITGKAGMLD EIINYVQSLQ  300
RQVEFLSMKL AAVNPRLDID IDNFFNKDIF ATSTSNFPTV GAGTSSEMLS MAQRQFNSLQ  360
QIVSSSGFEM GILNLSEMAL RRTTSAPVSI PEIFLDSSNI NQVQSFPTWD TELDNMYAME  420
LQQGRSAQFL PHPCTGFVEA GNDLKMEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	4e-50	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT08013