PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT07971

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 417aa MW: 46979.2 Da PI: 4.5749

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07971	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl OIT07971 14 RGRWTAEEDEILTKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	53.7	4.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE+++++++++ lG++ W++Ia +++ gRt++++k++w+++l OIT07971 67 RGNITSEEEDIIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
MGRAPCCEKV GLKRGRWTAE EDEILTKYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLRRGNI TSEEEDIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR 120 IPSDEKLPQA VVDLANKGTL NPIKCRVGTT SRPTIKKNRT LKKSASSLSE PKKPKESSEP 180 FSSIVPMPST PNMEKEALSS SISSWLDGNA MDSMQEEVAN VAAPNPWSGS RVVQSNLSSD 240 NGMEWLDEIM PMVMDDQDMD PNEFILTCLD NGQGECPEKV TNEAESNCGT TNRINEHNDK 300 DHDNKMVSSE DTQLESSPAS KAVSLNSLKD VQENSNETKL FMEDSTVEWD WQEIAEDSRE 360 VWSWEETGQD INHSWPLWDN TDTELLQNCT NEITVEMDSV LHSENQNHSA LVAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

MGRAPCCEKV GLKRGRWTAE EDEILTKYIQ TNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLRRGNI TSEEEDIIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRKVESLR  120
IPSDEKLPQA VVDLANKGTL NPIKCRVGTT SRPTIKKNRT LKKSASSLSE PKKPKESSEP  180
FSSIVPMPST PNMEKEALSS SISSWLDGNA MDSMQEEVAN VAAPNPWSGS RVVQSNLSSD  240
NGMEWLDEIM PMVMDDQDMD PNEFILTCLD NGQGECPEKV TNEAESNCGT TNRINEHNDK  300
DHDNKMVSSE DTQLESSPAS KAVSLNSLKD VQENSNETKL FMEDSTVEWD WQEIAEDSRE  360
VWSWEETGQD INHSWPLWDN TDTELLQNCT NEITVEMDSV LHSENQNHSA LVAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	4e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT07971