PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07776
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 330aa    MW: 37374.9 Da    PI: 6.9244
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07776genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.81.2e-1723103274
  trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
               Wt qe+++Liea++ ++er +r++          + +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++++++
  OIT07776  23 WTVQETMVLIEAKKMDDERRNRRQgdisergkPTELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERREAEK 103
               **************999999975333334433999****************************************997544 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDNILVGDQG GSSMLRDYRK GNWTVQETMV LIEAKKMDDE RRNRRQGDIS ERGKPTELRW  60
KWVEDYCWRN GCLRSQNQCN DKWDNLMRDF KKVREYERRE AEKAAEGGEE IMRSYWKIEK  120
NERKEKSLPT NMLPQIYEAL VEVVDRKGQR FLPASNSLPP TLQQQSTQPQ ITPLPLPPLP  180
LPPPPTVVAQ TAAHQLSDVA YTGQYPFPTM CDSSDPDTSD HRSDSPAKKR RMSGEGTSSG  240
TAKGNINNSS QEVGSAISKS AAIIAEAIQS CEEREERRHR ELLTLHERRL QIEESNAEIN  300
REGINGLVDS INKLANSILA LAGNKNQSAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-51Trihelix family protein