PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07653
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 321aa    MW: 37255.8 Da    PI: 8.6131
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07653genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131152344
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
              i+ +  r+ tf kR++g++KK +E  +LC+++ ++i++++++
  OIT07653 11 ISKEKARNATFKKRKEGLMKKLYEFTTLCNVNGCMIMYGPKQ 52
              888999*********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRAKLKMEL ISKEKARNAT FKKRKEGLMK KLYEFTTLCN VNGCMIMYGP KQSNGSNSEP  60
EIWTNNSMQS GNSTNKTIQV EEIQNLIDEY KKESSMQSGS TKTFGLSDYF IDRNKKVEEE  120
LIKLKKMNMQ KKYPCWLEFM NQLSEVKLRE FLTLLDDKVE KVKSRIDLLK GNFSSEGLSQ  180
LTHYNDNVNP LLVQGGMEYG GNNFMNNNQE QGAIYPYCNS IINHQEMMML MMNENDWQYN  240
GASSSSSNGN NNMRCALMKY ETMMSHNMML NNQMPYSPYV APTILQPAPY MMMPSVLPQM  300
YHPMKENERD EKLKLSPYLR Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-17M-type_MADS family protein