PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07564
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 303aa    MW: 33672.3 Da    PI: 9.8095
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07564genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.39.1e-32145201158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq Rak+e ekk  +k+rkpylheSRh+hA+rR+Rg+gGrF
   OIT07564 145 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 201
                69***************************9.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MPTIAKHDGR QLQTGLRITS QPTIQMQSWW QGYGDNTMPL ASENTVAQGN AEGGNEEKET  60
NAQATESGSK GNNMQYKQHL KHITSTTAPI MGEQQKDLTG HSAMLTSYPY PDLQYGGMMT  120
YGAPVHPHLF EIHNARMPLP LDMEEEPVYV NAKQYHGILR RRQIRAKAEL EKKAIKARKP  180
YLHESRHQHA MRRARGTGGR FLNTKKLNDM DCTTEEPKKY GATIPTHSGN SSGSGSSDQR  240
EKEGSAVQDM HKGRSRSFST SNGHGSSLYF SENTGNEQRN GYYGRGSWSL LVSQASRGTA  300
SNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-28NF-YA family protein