PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07441

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 605aa MW: 67322 Da PI: 6.8321

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07441	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.3	2.4e-12	434	480	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI ++q OIT07441 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITEMQ 480 799*********************66......*************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence
MGTGNMSWSN EDKATVASVL GKEAFEYLIS SSVSAECSLM AIGNDQNLQN KLSDLVECPN 60 ATNFSWNYAI FWQISRSKSG ELVLGWGDGC CREPREGEEC EVKRIFNLCL EDEAQQRMRK 120 RVLQKLHMLF GGTDEDNYAI GLDRVTDTEM FFLASMYFSF PQGEGGPGKC FGSGKHLWLS 180 DVLKSPLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVR SIPESLELLQ SIKSCFSSFL 240 VRAKQAAGIA VVTEKKDGNN SPFSSSAFSE RSDGTPKIFG HDLNSGTHFR EKLAVRKAEE 300 RPWDIYQNGN RMPFMNGRNG LHAASWAQFS NVKPVKPVEL YRPQTPPAHN LQELVNGGRE 360 EFHMNNFQHQ KPARMQIDFT GATSRPIISP SHTVESEHSD VEASCKEDRV GPVDEKRPRK 420 RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITEMQ 480 KKLRDMESER ELRLGSTSRD AMAAEDSPNS DIQIRGPDIN VEAANDEVIV RVSCPLESHP 540 ISRVIQTFKE AQINVVESKL SAGNGTVFHT FVLKSSGSDQ LTKEKLLAAL SSESDSLRQF 600 SPVGK

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence

MGTGNMSWSN EDKATVASVL GKEAFEYLIS SSVSAECSLM AIGNDQNLQN KLSDLVECPN  60
ATNFSWNYAI FWQISRSKSG ELVLGWGDGC CREPREGEEC EVKRIFNLCL EDEAQQRMRK  120
RVLQKLHMLF GGTDEDNYAI GLDRVTDTEM FFLASMYFSF PQGEGGPGKC FGSGKHLWLS  180
DVLKSPLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVR SIPESLELLQ SIKSCFSSFL  240
VRAKQAAGIA VVTEKKDGNN SPFSSSAFSE RSDGTPKIFG HDLNSGTHFR EKLAVRKAEE  300
RPWDIYQNGN RMPFMNGRNG LHAASWAQFS NVKPVKPVEL YRPQTPPAHN LQELVNGGRE  360
EFHMNNFQHQ KPARMQIDFT GATSRPIISP SHTVESEHSD VEASCKEDRV GPVDEKRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITEMQ  480
KKLRDMESER ELRLGSTSRD AMAAEDSPNS DIQIRGPDIN VEAANDEVIV RVSCPLESHP  540
ISRVIQTFKE AQINVVESKL SAGNGTVFHT FVLKSSGSDQ LTKEKLLAAL SSESDSLRQF  600
SPVGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	416	424	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT07441