PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07272
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 315aa    MW: 35115.6 Da    PI: 6.9838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07272genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-1398141855
               HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  OIT07272  98 TERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 141
               6*********************6....39******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MNEGSDRNCL IWENQGWSFL KSNNLDGSEE KFVGDKLSDP NRSNTSHDQP RTVAKAETKA  60
AARGRKRTAS GRKESDEAKC GGDGGGEEES DHEIHIWTER ERRKKMRNMF SNLHALLPQL  120
PPKADKSTIV DEAVNYIKTL QNTLHKLQNQ KLEKLHCLTA TMNSNDLSII TSQKLLESNN  180
RDIFLADQGS TSNSTAITPT NNNNTTPFLN IPTVFQTWTS PNVILNVCGE EAHISICCLK  240
KPGILSGICF VLEKYKIEMI SAQVSSDHYR CLYMIQAHAT GGSTLNQFSE ALPLLTVEEI  300
YKQAAGEIML WATSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-49bHLH family protein