PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT07268
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91297.2 Da    PI: 6.0851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT07268genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.85.9e-21135190156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  OIT07268 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 190
               688999***********************************************999 PP
2START202.41.9e-633425661206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               ela++a++elvk+a+ +ep+W++s+    e++n +e++++f++  +     + +ea+r++g+v+ ++  lve+l+d++ +W e+++    + +t++vissg
  OIT07268 342 ELALAAMDELVKMAQTDEPLWFRSVeggrEILNHEEYMRSFTPCIGmrpnsFVSEASRETGMVIINSLALVETLMDSN-KWAEMFPcliaRTSTTDVISSG 441
               5899**************************************9999****9***************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ ++ + +  ++ lpSg+l+++++ng+skvtwveh +++++++h l+r
  OIT07268 442 mggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRETSNAPTFPNSRILPSGCLVQDMPNGYSKVTWVEHGEYDESVIHHLYR 542
               *******************************************************99******************************************** PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
               +l++ g+ +ga++wvatlqrqce+
  OIT07268 543 PLISAGMGFGAQRWVATLQRQCEC 566
               **********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    
MNFGDFLDNT SGGGGGGVAR IVADIPFNNN NSNSSNNSSN NNNNNNNMPA GAISQPRLLT  60
QSLAKSMFNS PGLSLALQTG MEGQSEVTRM AENYEGNNSN GRRSREEEPD SRSGSDNLEG  120
ASGDDQDAAD KPPRKKRYHR HTPQQIQELE SLFKECPHPD EKQRLELSKR LSLETRQVKF  180
WFQNRRTQMK TQLERHENSI LRQENDKLRA ENMSIREAMR NPICTNCGGP AMIGEISLEE  240
QHLRIENARL KDELDRVCAL AGKFLGRPIS SLVNSMPPPM PNSSLELGVG NNGFGGLSNV  300
PTTLPLAPPD FGVGISNSLP VVASTRQTTG IERSLERSMY LELALAAMDE LVKMAQTDEP  360
LWFRSVEGGR EILNHEEYMR SFTPCIGMRP NSFVSEASRE TGMVIINSLA LVETLMDSNK  420
WAEMFPCLIA RTSTTDVISS GMGGTRNGAL QLMHAELQVL SPLVPIREVN FLRFCKQHAE  480
GVWAVVDVSI DTIRETSNAP TFPNSRILPS GCLVQDMPNG YSKVTWVEHG EYDESVIHHL  540
YRPLISAGMG FGAQRWVATL QRQCECLAIL MSSTVSSRDH TAITPSGRRS MLKLAQRMTN  600
NFCAGVCAST VHKWNKLCAG NVDEDVRVMT RKSVDDPGEP PGIVLSAATS VWLPVSPQRL  660
FDFLRDERLR SEWDILSNGG PMQEMAHIAK GQDHGNCVSL LRASAINANQ SSMLILQETC  720
IDAAGALVVY APVDIPAMHV VMNGGDSAYV ALLPSGFSIV PDGPGSRGSN TANCGSNGPS  780
CNGGPDQRIS GSLLTVAFQI LVNSLPTAKL TVESVETVNN LISCTVQKIK AALHCES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein