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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT07258 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | YABBY | ||||||||
| Protein Properties | Length: 220aa MW: 24294.7 Da PI: 8.1084 | ||||||||
| Description | YABBY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | YABBY | 234.8 | 2e-72 | 23 | 184 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekeesastsvssekls 102
s eq+CyvqCnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++++ ll++ ++l+ llee +++ l n+ + ++ + ++
OIT07258 23 SGEQLCYVQCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNVNMRGLLLPSANQLHLPHSFFspqnLLEEIRNSPPGLLINQPNPNE--S-----LMP 116
579***************************************************998765433331123455555444444444333222..2.....346 PP
YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
+e+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
OIT07258 117 VRGVDELPKPPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 184
677899***999******************************************************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 220 aa Download sequence |
MSSSSAAFAP DHHLHHHHLS PPSGEQLCYV QCNFCDTVLA VSVPCSSLFK TVTVRCGHCT 60 NLLSVNVNMR GLLLPSANQL HLPHSFFSPQ NLLEEIRNSP PGLLINQPNP NESLMPVRGV 120 DELPKPPVAN RPPEKRQRVP SAYNRFIKDE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI 180 HFGLMPDQPV KKPNACQQQG EDALMKEGFL APANVGVSPY |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G45190.1 | 2e-92 | YABBY family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT07258 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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