PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07048

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 606aa MW: 67278.7 Da PI: 7.0777

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07048	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	6.9e-12	438	484	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I +Lq OIT07048 438 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITELQ 484 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MKIEMGLGNM LWSDEDKAMV AAVLGTKAFD YLMSSSVSAE CSLMAMGNDE NLQNKLSDLV 60 ERPNGANFSW NYTIFWQISR SKSGELVLGW GDGCCREPRE GEGSEITRIL NLRLENEAQQ 120 RMRKRVLEKL HMLFGGTDED NYAFGLDKVT DTEMFFLASM YFSFPRGEGG PGKCFGSGKH 180 VWLSDVMKSS VDYCSRSFLM KSAGMQTIVL IPTDVGVVEL GSVRAISESL ELVQSIKSCF 240 SSFLSLVRAK QGGSVTVVAE KKDGNGSPYS SSFVSEQPNG IPKIFGQNLN SGCTPFREKL 300 AVRKAEDRPL EMYQNGNRGQ FINARNGLRA ASWASFSNVK PVNSVDPYRP QVPANNVRDF 360 VNGTREEFHI NNFQHQKNAS MQIDFTNSRP VISPAHTVES EHSDVEASCK EDHAGPADDK 420 RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAHI 480 TELQKKLRDM ESERERLGST SRDANASASE STNSETQNRP DINIEAANDE VVVRVRCALD 540 THPVSRVIEA FKEARVNVVE SKLAAGNDTV YHTFVVESSG SEQLTKEKLM AAFSGESNAL 600 RPSPVR

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MKIEMGLGNM LWSDEDKAMV AAVLGTKAFD YLMSSSVSAE CSLMAMGNDE NLQNKLSDLV  60
ERPNGANFSW NYTIFWQISR SKSGELVLGW GDGCCREPRE GEGSEITRIL NLRLENEAQQ  120
RMRKRVLEKL HMLFGGTDED NYAFGLDKVT DTEMFFLASM YFSFPRGEGG PGKCFGSGKH  180
VWLSDVMKSS VDYCSRSFLM KSAGMQTIVL IPTDVGVVEL GSVRAISESL ELVQSIKSCF  240
SSFLSLVRAK QGGSVTVVAE KKDGNGSPYS SSFVSEQPNG IPKIFGQNLN SGCTPFREKL  300
AVRKAEDRPL EMYQNGNRGQ FINARNGLRA ASWASFSNVK PVNSVDPYRP QVPANNVRDF  360
VNGTREEFHI NNFQHQKNAS MQIDFTNSRP VISPAHTVES EHSDVEASCK EDHAGPADDK  420
RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAHI  480
TELQKKLRDM ESERERLGST SRDANASASE STNSETQNRP DINIEAANDE VVVRVRCALD  540
THPVSRVIEA FKEARVNVVE SKLAAGNDTV YHTFVVESSG SEQLTKEKLM AAFSGESNAL  600
RPSPVR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	420	428	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT07048