PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT07026

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

RAV

Protein Properties

Length: 383aa MW: 43125.8 Da PI: 9.6544

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT07026	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.4	1.7e-13	63	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g OIT07026 63 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENEAARAYDVAAQRFRG 111 78**9888.8*****3.....5***********************98 PP
2	B3	105.8	2.1e-33	198	295	1	94
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l +ed+sg++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ ++++l++ OIT07026 198 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqNGNTSKGVLLNFEDLSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGEDKQLYI 295 89**************************99999**************************************************87556666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MERSSSIDES TTSDSLSIAP AISTSTLPVT KSPESLCRMG SGTSVIIDAE NGVEAESRKL 60 PSSRYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDVAAQRFR GRDAVTNFKP 120 LLENEENDDM EIAFLNSHSK AEIVDMLRKH TYIDELEQSK KNFGFNKDGK RAYCTKDGLM 180 SSFFSSVDKV NKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGN TSKGVLLNFE 240 DLSGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLKAGDI VSFQRSTGED KQLYIDFKVR 300 NATPTISPAV ASQVQVQVQV PQVQMVRLFG VNICKVPAVS NVVIDNNNNN NMTSCSGGKR 360 RIEMELLTFE SCRKKQRVII NAL

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MERSSSIDES TTSDSLSIAP AISTSTLPVT KSPESLCRMG SGTSVIIDAE NGVEAESRKL  60
PSSRYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEENEAAR AYDVAAQRFR GRDAVTNFKP  120
LLENEENDDM EIAFLNSHSK AEIVDMLRKH TYIDELEQSK KNFGFNKDGK RAYCTKDGLM  180
SSFFSSVDKV NKAREQLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLQNGN TSKGVLLNFE  240
DLSGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKNLKAGDI VSFQRSTGED KQLYIDFKVR  300
NATPTISPAV ASQVQVQVQV PQVQMVRLFG VNICKVPAVS NVVIDNNNNN NMTSCSGGKR  360
RIEMELLTFE SCRKKQRVII NAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-143	RAV family protein

Link Out ? help Back to Top
Ensembl	OIT07026