PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06986
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 714aa    MW: 78644.4 Da    PI: 5.2707
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06986genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.67.5e-1333487131374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
               lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL arla    + +++++a +p +  + ns e l++++++++++P++kf+h+ta
  OIT06986 348 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAAtlaTKPSTSSAPKPFNPFPPNSLEILKIYQILYQACPYVKFAHFTA 448
               68***************************************************98443456677777666666778************************* PP

      GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
               NqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s ++++etg+ L+++A++l+vpfef++ v ++ledl++++++ + g
  OIT06986 449 NQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPDAVRETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPHMFNRRIG 544
               ***************************************************....9**************************.7***************** PP

      GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
               EalaVn+v +lhr++       +++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s++r+k+E+ ++++ei+n+v+c
  OIT06986 545 EALAVNSVNRLHRVP------VNCIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSSQRAKLEQYIFAPEIMNIVSC 639
               **************9......444557************************************************************************** PP

      GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                gaer+ rhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgy++ e++g+l+lgW+dr+++++SaWr
  OIT06986 640 DGAERVVRHERLEKWRRLMEGRGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 713
               *************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    
MSVMNNSLSV SMGSLKNDIK SEVGSLKSEI GSFKSENSYS KLPLDESSLA SSESKKVTPI  60
TSDFELNCGS LTPTSLSFPA LKFEVDDDVE IQSPDNSIWE SFFADQLEGD FMISSPVRNL  120
PSPQPASGFS TTTHNNNNNN NNNYNVYAHH QGIHGQSMMI FSPPRSPLGP NYHSSNKGKG  180
LSPLQKVFNS PNNQFMQIES FNLPALESFL DDDYDKEEGF ASSYSALKVS GSGVAGSSSE  240
SFDALSVVPD LLECLALPNS SSNTPDSFMG SLLGDTSAVP DDEIFQTGSI APLSQQLQQE  300
RQHENQQKQR PITHAQPPTT QQLQHTQIIN HNLAVAAPDQ EQDSGLQLVH LLLACAEAVS  360
KEDYMLARRY LHHLNRVVTP IGDSMQRVAS CFTEALTARL AATLATKPST SSAPKPFNPF  420
PPNSLEILKI YQILYQACPY VKFAHFTANQ AIFEAFEAEE RVHVIDLDIL QGYQWPAFMQ  480
ALAARPGGAP FLRITGVGPS PDAVRETGRC LTELAHSLHV PFEFHPVGEQ LEDLKPHMFN  540
RRIGEALAVN SVNRLHRVPV NCIGNLLAMI RDQAPNIVTI VEQEASHNGP YFLGRFLEAL  600
HYYSAIFDSL DATFPADSSQ RAKLEQYIFA PEIMNIVSCD GAERVVRHER LEKWRRLMEG  660
RGFKGVALSA NAVTQSKILL GLYSCDGYKL TEDNGCLLLG WQDRAILAAS AWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-97GRAS family protein