PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT06968

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 366aa MW: 41895.5 Da PI: 4.4743

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT06968	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.5	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ ++ g+ R++k+c++rw +yl OIT06968 14 RGRWTEEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*****************************99**********97 PP
2	Myb_DNA-binding	43.7	6.4e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E+ +++++ + lG++ W+ Ia++++ gRt++++k++w++ OIT06968 67 RGNITPAEEAIIIKLRATLGNR-WSVIAEYLP-GRTDNEIKNYWNS 110 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MGRTPCCDKV GLKRGRWTEE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LKTDLKRGNI TPAEEAIIIK LRATLGNRWS VIAEYLPGRT DNEIKNYWNS RLSRKVESLR 120 IPSDEKLPQA VVELAKKGTQ QLKKQRRRRT SPSSKSIASN LSKPDQPVAE PEFLPNENVV 180 PTPSTPNIEK EASSSTINIT TSLWQEYENN IIPSGNNAIE LDNDQMQWRD DIVLIDEDEE 240 LDQDFMLSCL WNGEGENLEI VENNNNNSNN NIEKVLSEEG GHDKIIVSDE TKTFMGDWEY 300 LWASHEEVEQ ENNMSNNNYY VSSWSLWDSN DNAGLQQNCT NKAMIEIDQM QSEDLQHSDL 360 VAWLLS

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MGRTPCCDKV GLKRGRWTEE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LKTDLKRGNI TPAEEAIIIK LRATLGNRWS VIAEYLPGRT DNEIKNYWNS RLSRKVESLR  120
IPSDEKLPQA VVELAKKGTQ QLKKQRRRRT SPSSKSIASN LSKPDQPVAE PEFLPNENVV  180
PTPSTPNIEK EASSSTINIT TSLWQEYENN IIPSGNNAIE LDNDQMQWRD DIVLIDEDEE  240
LDQDFMLSCL WNGEGENLEI VENNNNNSNN NIEKVLSEEG GHDKIIVSDE TKTFMGDWEY  300
LWASHEEVEQ ENNMSNNNYY VSSWSLWDSN DNAGLQQNCT NKAMIEIDQM QSEDLQHSDL  360
VAWLLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	4e-67	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT06968