PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT06898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26464.7 Da PI: 10.1944 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.7 | 1.4e-15 | 49 | 95 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P + K +Ka++L +++eY+ksLq OIT06898 49 VHNLSERKRRDRINEKMKALQELIPRC-----NKSDKASMLDEVIEYVKSLQ 95 6*************************8.....6******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MQICILLKGI SSAAFKLNCL FKDAEFESAD AKKQTSSSTS TKRSRAAEVH NLSERKRRDR 60 INEKMKALQE LIPRCNKSDK ASMLDEVIEY VKSLQMQVQM MSRGYSMVPM MYPGAPQYMP 120 TMGMGMRMGM GTGMGMNRPM VPYPSLMPGT AMQNAAAVAQ MTPRFPVPAS VPVPDPSRIR 180 AANQPDHPMM NSLVGHNTNQ PRLPNLSDPY QQYYALHQAQ VLPQFLNAKS ASGTTQQQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 59 | ERKRRD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 9e-31 | bHLH family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT06898 |