PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06408
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 331aa    MW: 38295.3 Da    PI: 7.1622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06408genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13153198454
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h ++Er+RR+++ ++f +L  +lP +     kK++Ka+iLe+A++++k+L
  OIT06408 153 DHIIAERKRREKLSQRFVTLSAILPGL-----KKVDKASILEQAIRHVKEL 198
               6999***********************.....9****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDNSSLRWFS RMGEAGAYYS NEKKSVDDFT TQKSTISEDG EIRELSLSPD SSHRSNYFKQ  60
ENKSKVSKFD FSLITPLENQ PKMNSNMLSF THNMYSDHQV CKIEAVDEMY LRDSDHKYFQ  120
FLKSKSGYDQ KDSLAKKLGQ GQKRERFLSV DQDHIIAERK RREKLSQRFV TLSAILPGLK  180
KVDKASILEQ AIRHVKELKE KVKQLEEEEK TRSLESVMFV NKSQLEEDDH SSSSSDENNH  240
SSSVDADIEV RFSDKNVLIR ITCERHNAFV LNIHNEIEKL HLSIVQSSMM PFGKQAIDVT  300
LVAQMEDSFC MTLKDLMKHV RMVTARLMTQ A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-39bHLH family protein