PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT06374
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 254aa    MW: 28065.6 Da    PI: 8.6772
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT06374genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08161201954
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  OIT06374 161 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 201
               699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MDIEMLKSAT ASEDQMELML MMQLDKLPDF STGNCSELAM MDFSPQGSCN SNSSGNGNTN  60
YFLNQIDHNT PTFLNIPSTN ISFTNSHQNP STLQNFLANN SSSSSSGAYN SHSMNRSNMA  120
AMREMIFRIA AMQPINIDPE SVKPPKRRNV KISTDPQSVA ARHRRERISE RIRILQRLVP  180
GGTKMDTASM LDEAIHYVKF LKNQVQSLER AGANRPSNSV AATGLGFPVP MSLSGNYLPV  240
SSKSYQNIQQ YADA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.13e-42bHLH family protein