PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT05817

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 299aa MW: 33372 Da PI: 7.5037

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05817	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	100.8	2.4e-31	51	181	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............................ssssase 72 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ + + OIT05817 51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLqippgslnpnlypmlgiggsqinkevglknT------ 145 689*************************************************************6666655555555555553322222222210...... PP TCP 73 ceaesssssasnsssg.............................k 89 ss s++ + OIT05817 146 -----SS-----TSINwdvplqpssnvalpynsnflkwdpsnlslA 181 .....11.....1111333333322233333334444444333332 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MITREVNKQE GDPNDDGNKS IPNNKASSSS NSTTSWTRLK DPRIVRVSRA FGGKDRHSKV 60 CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKDEIDE LPPLQIPPGS 120 LNPNLYPMLG IGGSQINKEV GLKNTSSTSI NWDVPLQPSS NVALPYNSNF LKWDPSNLSL 180 AHPENHHRGT SSSHQHEDIH NFNIMSMPIG SQVLVYPQGL PQSFFHPHNI SAGASSDQFD 240 PKEINFQMLS SENPMSTANS FRHSIVSTTQ SHARPFHFLP SQNSEGREPN EDREFHNSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.2	2e-48	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT05817