PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05817
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 299aa    MW: 33372 Da    PI: 7.5037
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05817genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.82.4e-3151181289
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............................ssssase 72 
                g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak +i+el+ +                              +      
  OIT05817  51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLqippgslnpnlypmlgiggsqinkevglknT------ 145
               689*************************************************************6666655555555555553322222222210...... PP

       TCP  73 ceaesssssasnsssg.............................k 89 
                    ss      s++                             +
  OIT05817 146 -----SS-----TSINwdvplqpssnvalpynsnflkwdpsnlslA 181
               .....11.....1111333333322233333334444444333332 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MITREVNKQE GDPNDDGNKS IPNNKASSSS NSTTSWTRLK DPRIVRVSRA FGGKDRHSKV  60
CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKDEIDE LPPLQIPPGS  120
LNPNLYPMLG IGGSQINKEV GLKNTSSTSI NWDVPLQPSS NVALPYNSNF LKWDPSNLSL  180
AHPENHHRGT SSSHQHEDIH NFNIMSMPIG SQVLVYPQGL PQSFFHPHNI SAGASSDQFD  240
PKEINFQMLS SENPMSTANS FRHSIVSTTQ SHARPFHFLP SQNSEGREPN EDREFHNSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.22e-48TCP family protein