PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05379

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 701aa MW: 76783 Da PI: 6.7813

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05379	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.9e-07	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg OIT05379 280 PCPEFRK-GACRRGDMCEYAHG 300 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MNMNHLTVET EDAFASLLEF AANNDIEAFK SWMERDISGI HEVGLWYGRQ KGSKQMVLEH 60 RTPLMVAAMY GSVDVLKLIL SLPGVDVNHS CSRDNSTALH CAASGGSLNA VDAVKLLVEA 120 GADPNIKNTN GHRPLDVIVI SPKFHTMKSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS 180 PSPGNRSSSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS 240 FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HMQEELRPLY VSAGSAVPSP RSNTSAANAL 360 DFAAAMGLIP GSPSSVSVMP PSPFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL 420 RSSLNARDIP AEDMTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFSHSVRP RTLTPSNLED 480 SFSAESSSPR YSDHSLPQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK TVESPLLQGS 540 FGVPPMRNMS PRGMEPISPM SSRASILSQS DKQQQFRSLS SRDLGSSASA IVGSPADTWS 600 NWGTATGQPD WAVNTEEFGR LRRSSSFELA NSGEEPDLSW VQSLVKESPQ EVKDKSASRV 660 SGLTNAGADI REASTSSSQI GQFDQLGAWM EQMKLDQLIP Q

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MNMNHLTVET EDAFASLLEF AANNDIEAFK SWMERDISGI HEVGLWYGRQ KGSKQMVLEH  60
RTPLMVAAMY GSVDVLKLIL SLPGVDVNHS CSRDNSTALH CAASGGSLNA VDAVKLLVEA  120
GADPNIKNTN GHRPLDVIVI SPKFHTMKSC LENLLKTDAT EDCNLRVSMA TSSSNSPPLS  180
PSPGNRSSSS ASDTTSSPRS AKSSDLPVPF TSEKKEYPID PSMPDIKNSI YSTDEFRMFS  240
FKIKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP CPEFRKGACR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT NCDRRVCFFA HMQEELRPLY VSAGSAVPSP RSNTSAANAL  360
DFAAAMGLIP GSPSSVSVMP PSPFTPPMSP SANGISNIGW PQQNVPALHL PGSNLQSSRL  420
RSSLNARDIP AEDMTMLSDF DVQQKQLLYE LSCLSHSSMN ANSFSHSVRP RTLTPSNLED  480
SFSAESSSPR YSDHSLPQAV FSPTHKSIGF NQFQQQQATL SPINTRFSPK TVESPLLQGS  540
FGVPPMRNMS PRGMEPISPM SSRASILSQS DKQQQFRSLS SRDLGSSASA IVGSPADTWS  600
NWGTATGQPD WAVNTEEFGR LRRSSSFELA NSGEEPDLSW VQSLVKESPQ EVKDKSASRV  660
SGLTNAGADI REASTSSSQI GQFDQLGAWM EQMKLDQLIP Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT05379