PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05360

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 1059aa MW: 118850 Da PI: 7.0421

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05360	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.9	9.9e-08	331	424	1	47
TSSS-HHHHHHHHHHHHHTTTT...............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...............................................tWktIartmgkgRtlkqcksrwqky 47 r+ W++eE e l+++vkq + +W+ +a++ gR++ +c+srw+++ OIT05360 331 RKEWSKEERENLAKGVKQQFQEmllqrsvdllsnedgrsgesgdldgliasirdvvitpetmrlflpkvNWDQVAAMYIPGRSGAECQSRWLNW 424 789**************999*************************************************99888**********98 PP
2	Myb_DNA-binding	42.6	1.4e-13	484	528	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r WT+eEd +l av+ +G +W ++a+ + gRt+ qc +rw k OIT05360 484 RREWTEEEDIKLCAAVETFGESNWQLVASVIE-GRTGTQCSNRWIK 528 678***************************.*********87 PP
3	Myb_DNA-binding	41.4	3.2e-13	538	595	2	46
SSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 g+W+++Ed++l+ av ++ ++ Wk+Ia++++ gRt qc++rw + OIT05360 538 GKWSADEDKRLKVAVMLFHPKswrnigqsvpcrapIWKKIAQYVP-GRTHVQCRERWVN 595 89***************99********************.*********87 PP
4	Myb_DNA-binding	47.2	5.1e-15	605	647	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd++l+ a+ ++G W+++a++++ Rt++qc+ rw + OIT05360 605 EWTEEEDLKLKSAIDEHGYS-WSKVAACVP-PRTDNQCRRRWKVL 647 7***************99.*****.9********865 PP

Sequence ? help Back to Top
Protein Sequence Length: 1059 aa Download sequence
MAFDDDDDFS GSDSDDGFQE DMKALKKACL LAGKETDDLQ PSCSTGDIGG GHVTGADDVT 60 PSGTDVDDVD DDIELVRSIQ ERFALSTELR EPLTLKPLCS LPPPGSEGDD DDDDFETLRA 120 IQRRFAAYND DSGKGRKESP LNNFEQVGVT NITSEKESSN NFFVERTNAG EGFPACVDGT 180 IQISDGCSNE IASSQNLIEW HDSGAENTAV SVNSFCFPKS AQAFVEAIKK NRSCQKIIRD 240 KMMQIEARME ELKKLKERVK ILKGFQIASR KRMGRALSQK RDARVQLISL PKQKCSSKGK 300 KLSAIHYGPP ENSHVASVRE ALTHFAVSLS RKEWSKEERE NLAKGVKQQF QEMLLQRSVD 360 LLSNEDGRSG ESGDLDGLIA SIRDVVITPE TMRLFLPKVN WDQVAAMYIP GRSGAECQSR 420 WLNWEDPLIK HEEWDILEEK ALLHAVQRNE MSNWIDISAS LGVCRTPFQC LSHYQRSLNA 480 SILRREWTEE EDIKLCAAVE TFGESNWQLV ASVIEGRTGT QCSNRWIKSL HPTRKRCGKW 540 SADEDKRLKV AVMLFHPKSW RNIGQSVPCR APIWKKIAQY VPGRTHVQCR ERWVNSLDPS 600 LKLDEWTEEE DLKLKSAIDE HGYSWSKVAA CVPPRTDNQC RRRWKVLFPD EVPMLQEAKK 660 IRREAFISNF VDREEERPAL RPNDIVPTHK LSYRAGCGTA SANKRRKLRP RAARDDSAPR 720 CDALCELERR HLEESEGPES SDLLNNSSLS SRDQEIERIS DGEEAFEQGY HDSTKNKRPS 780 KLHPRRTKKL APNDMVPEAS ASSKVESTTA VNNICKNRRR TSSLVKKKRT IASQESSSSL 840 PNLSSSMTVV EEVDSHVQDS GKTMNIMDKP HSTSGYDDSC VNSEGPPLSR PHLDKGTADL 900 DVGENRVWEN VSTIGPQESS LYFQKNAFVC TDENARQLKA SGCHKLNKCK QLKCDGRFSL 960 TNLRETADDC MTLASFILKS RAKRRSFSSA KVAKLRPDIA QSKDVADDHS SRSCISGGHD 1020 GVEKTMTQEC TSSNQISRAE VADDMPLALV MGRVKRRPR

Sequence ? help Back to Top

Protein Sequence Length: 1059 aa Download sequence

MAFDDDDDFS GSDSDDGFQE DMKALKKACL LAGKETDDLQ PSCSTGDIGG GHVTGADDVT  60
PSGTDVDDVD DDIELVRSIQ ERFALSTELR EPLTLKPLCS LPPPGSEGDD DDDDFETLRA  120
IQRRFAAYND DSGKGRKESP LNNFEQVGVT NITSEKESSN NFFVERTNAG EGFPACVDGT  180
IQISDGCSNE IASSQNLIEW HDSGAENTAV SVNSFCFPKS AQAFVEAIKK NRSCQKIIRD  240
KMMQIEARME ELKKLKERVK ILKGFQIASR KRMGRALSQK RDARVQLISL PKQKCSSKGK  300
KLSAIHYGPP ENSHVASVRE ALTHFAVSLS RKEWSKEERE NLAKGVKQQF QEMLLQRSVD  360
LLSNEDGRSG ESGDLDGLIA SIRDVVITPE TMRLFLPKVN WDQVAAMYIP GRSGAECQSR  420
WLNWEDPLIK HEEWDILEEK ALLHAVQRNE MSNWIDISAS LGVCRTPFQC LSHYQRSLNA  480
SILRREWTEE EDIKLCAAVE TFGESNWQLV ASVIEGRTGT QCSNRWIKSL HPTRKRCGKW  540
SADEDKRLKV AVMLFHPKSW RNIGQSVPCR APIWKKIAQY VPGRTHVQCR ERWVNSLDPS  600
LKLDEWTEEE DLKLKSAIDE HGYSWSKVAA CVPPRTDNQC RRRWKVLFPD EVPMLQEAKK  660
IRREAFISNF VDREEERPAL RPNDIVPTHK LSYRAGCGTA SANKRRKLRP RAARDDSAPR  720
CDALCELERR HLEESEGPES SDLLNNSSLS SRDQEIERIS DGEEAFEQGY HDSTKNKRPS  780
KLHPRRTKKL APNDMVPEAS ASSKVESTTA VNNICKNRRR TSSLVKKKRT IASQESSSSL  840
PNLSSSMTVV EEVDSHVQDS GKTMNIMDKP HSTSGYDDSC VNSEGPPLSR PHLDKGTADL  900
DVGENRVWEN VSTIGPQESS LYFQKNAFVC TDENARQLKA SGCHKLNKCK QLKCDGRFSL  960
TNLRETADDC MTLASFILKS RAKRRSFSSA KVAKLRPDIA QSKDVADDHS SRSCISGGHD  1020
GVEKTMTQEC TSSNQISRAE VADDMPLALV MGRVKRRPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1053	1059	RVKRRPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-167	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT05360