PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT05259

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 275aa MW: 32248.5 Da PI: 10.0261

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT05259	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.2e-18	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++a g++R +k+c++rw +yl OIT05259 17 KGPWTAEEDRLLIEYVKLHGEGRWSSVATVAGLKRNAKSCRLRWVNYL 64 79********************************************97 PP
2	Myb_DNA-binding	45	2.5e-14	70	123	1	47
TSSS-HHHHHHHHHHHHHTTTT........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg........tWktIartmgkgRtlkqcksrwqky 47 +g T E++l++++++++G+ +W+tIa+ ++ gRt++++k++w+++ OIT05259 70 KGQITSHEEKLILELHARWGNSdnliknkyRWATIAKSLP-GRTDNEIKNYWRTH 123 577799*************9**************.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MSEEICSWGM TKEGWRKGPW TAEEDRLLIE YVKLHGEGRW SSVATVAGLK RNAKSCRLRW 60 VNYLRPDLKK GQITSHEEKL ILELHARWGN SDNLIKNKYR WATIAKSLPG RTDNEIKNYW 120 RTHFKKKTKN SRNRSEKSKA PLLKRQQFQQ QQQQKPKTES DTKRVVSYNS KKKNYYASIL 180 NKLGNRIVSL LNENVNKVST LPQGNQEMEI LYPNRADQEQ DDDFFYSILN DYTPVPVLES 240 SSNEVIIWDG LWNLDNFQCN FSATNYDKSL AIPFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	9e-72	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT05259