PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT05198
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 418aa    MW: 45867.2 Da    PI: 5.769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT05198genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.85.8e-063083461154
               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OIT05198 308 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 346
               5778999**********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    
MAEEFQLGNG NWWDNTSISR NSAPTVASTT VSNMSSNYSN WQNTETQVDI KPRTFLDSGS  60
VLSESSGGGG GSGGGGGGVL SADNNFQMMG LGLTSQPHDW NQSLLRGEKA ESGFSSILQQ  120
EDLNSNTNNY QLEASNSQQD NHWNRQKIYS GNSEDSSSVD DYKQMNFVYN INPSNNYGLS  180
QESAAHDHHL MNSSTTSSWS KFPQFLRTSP PEQQPLPPSL PPQPHSQLHF SNNTPFWNAS  240
AAAMNNDVPS SLFPSNLHPQ LPVPIVDEKA KNMGEVRDIN KMSKKTSSEI SNKRPRDETP  300
SPSPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI EYIKFLHDQI GALSAPYMKS  360
GSSAMQHQQS SKKSEDAEGQ NQDLRSRGLC LVPVSSTFPV THETTVDFWT PTFGGTFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-69bHLH family protein