PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT05074 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 260aa MW: 29308.2 Da PI: 9.2555 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7.4e-08 | 67 | 88 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C f r G C+yG+ C++aH OIT05074 67 PPCLQFKRWGSCSYGNECRYAH 88 89******************** PP | |||||||
2 | zf-CCCH | 22.5 | 2.1e-07 | 106 | 129 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k + C++f + +C+yG++C+F H OIT05074 106 KPKSCHYFDSGKECPYGNKCHFLH 129 566799999999************ PP | |||||||
3 | zf-CCCH | 34.7 | 3e-11 | 169 | 194 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C ++ rtG C yG++C+FaHg+ OIT05074 169 KTKFCVNWERTGSCAYGSKCQFAHGK 194 566699******************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MSTPANNFGI SCKREEHFST HWPQFNTSGQ KCGFSSNAEC QSFKRPRMMN SKMGPEDNRS 60 MNLGPQPPCL QFKRWGSCSY GNECRYAHIT GRLNGIRVED QRNLSKPKSC HYFDSGKECP 120 YGNKCHFLHE RNQKLEGGVG FCRVSSAISI ATSGREHKRT VELRKELLKT KFCVNWERTG 180 SCAYGSKCQF AHGKAELQTL GSSNTLEPLG TSGISAPAKT AASECRFLFK WTNVQKISQI 240 YADWIERVQL VPLSSHTMEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-20 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT05074 |