PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04979

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 328aa MW: 36634.7 Da PI: 7.39

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04979	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.8	8.5e-30	51	150	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............. 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++ ++ +++++ a+ + OIT04979 51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLNQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAqFQSDHQFDAA----Nlrakskvidtdtvy 147 78*************************************************************8888755522222222222....111223344444443 PP TCP 89 ..k 89 + OIT04979 148 gkN 150 321 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MNSSANNFMA KQESGGTNNS KLTSKATTST SSRQWGGFKN PRIVRVSRTF GGKDRHSKVC 60 TIRGLRDRRI RLSVPTAIQL YDLQDRLGLN QPSKVVDWLI EATKHEIDKL PPLQIPPGYF 120 AQFQSDHQFD AANLRAKSKV IDTDTVYGKN KSIASNEQEK QEEIGGYVPQ ISAQSFFPLG 180 NKSPNLPGLI NSSMPFNSYY PWEPNSSLSL AHFGQPQIEE SSQNNFPLSL ASSLSLPSGS 240 QLYFNPTATT FSPMISPYMT HYPIENDPRA QLNHFHFLSS SSQHVLPNPP VSTLNLIKPF 300 SLNDDPRWNI HSREDDDDDS QPHEGGDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	6e-47	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT04979