PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

OIT04865

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 239aa MW: 27462.1 Da PI: 9.7592

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04865	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.1	2.7e-15	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+ ++ ++G +W+ ++ g+ Rt+k+c++rw +yl OIT04865 19 KGAWSPEEDQKLKSYIMRYGIWNWSHMPKFAGLSRTGKSCRLRWMNYL 66 79****************99**********************97 PP
2	Myb_DNA-binding	45.6	1.6e-14	72	117	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g++T +E e l++ ++lG++ W++Ia++++ gRt++++k++++++l OIT04865 72 KGPFTMQERETLINMYQELGSR-WSAIAAKLP-GRTDNDVKNFFYTHL 117 79******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MSSVPQQQQK STNMEEIKKG AWSPEEDQKL KSYIMRYGIW NWSHMPKFAG LSRTGKSCRL 60 RWMNYLHPDV KKGPFTMQER ETLINMYQEL GSRWSAIAAK LPGRTDNDVK NFFYTHLKKH 120 MGMKNDALLK SNARRKRVEN TKKAQERPVL FAAINNLTIG TSSNNSLISP DVSSSCSSSS 180 IITFGENQKM NIDMENTVIL ESNPETHQSD HSLSIESVDQ FDTSSFWFHL LNDAHRLIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-47	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT04865