PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04863
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 271aa    MW: 31567.2 Da    PI: 7.1295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04863genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.82.9e-142067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l+ ++ + G  +W+  +r  g+ Rt+k+c++rw +yl
         OIT04863 20 KGAWSPEEDQKLKSYIMRCGIWNWSHMPRFAGLSRTGKSCRLRWINYL 67
                     79******************99************************97 PP
2Myb_DNA-binding41.72.6e-1373118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE e +++  ++ G++ W+ Ia++++ gRt++++k++++++l
         OIT04863  73 RGPFSIEERETIIKTYQEVGNR-WSEIAARLP-GRTDNEVKNYFHTHL 118
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
MPRVPPQQQQ KSTNMEEIKK GAWSPEEDQK LKSYIMRCGI WNWSHMPRFA GLSRTGKSCR  60
LRWINYLRPD VKRGPFSIEE RETIIKTYQE VGNRWSEIAA RLPGRTDNEV KNYFHTHLKK  120
HLGVKNDAPS KTKARSNKRA VKKTKGNERT NADKGSPVVS SSDSNSIITF EVNQMMDVTM  180
NSSQTYQDWY NIVDQQNIEM EIRPVILESN PDDGTYNSNG QQLHDQFECS HDISEYYSSF  240
DSIDQFNMSS FWFGELWDVE TSDFLRDVIT N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-47MYB family protein