PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04740

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 1239aa MW: 138481 Da PI: 9.2965

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04740	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	1123	1148	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C C++sFs+k +L H ++ + OIT04740 1123 YHCDleGCSMSFSTKQELSLHKKNvC 1148 889999***************99866 PP
2	zf-C2H2	11	0.0013	1147	1170	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp C+k F ++ +L++H r+H OIT04740 1147 VCPveGCKKKFFSHKYLVQHRRVH 1170 69999*****************99 PP
3	zf-C2H2	12.2	0.00055	1206	1232	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H OIT04740 1206 YVCTetGCGQTFRFVSDFSRHKRKtgH 1232 99********************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1239 aa Download sequence
MAEASGNIDV FPWLKTLPVA PEYHPTLEEF QDPIAYIFKI EKEASKYGIC KIVPPVPAPP 60 KKTALAYLNR SLSARSGSNG GPTFTTRQQQ IGFCPRKHRP VKKPVWQSGE NYTVQEFQAK 120 AKAFEKNYLK KNFKKALTSP LEIETLYWKA TVDKPFSVEY ANDMPGSAFT PKKVGNAVTT 180 LADTEWNMRG VSRAKGSLLK FMKEEIPGVT SPMVYLAMMF SWFAWHVEDH DLHSLNYLHM 240 GAGKTWYGVP RDAAVAFEEV IRVHGYAGET NPLVTFATLG EKTTVMSPEV LLSAGIPCCR 300 LVQNAGDFVI TFPRAYHSGF SHGFNCGEAS NIATPGWLIV AKDAAIRRAS INCPPMVSHF 360 QLLYDLALSL CSRVPKNIRI EPRSSRLKDK KKSEGDMLVK ELFVEDLNCN NYLLHILGEG 420 SPVVLLPRHY SGISIGSNSV AESQLKVNSR FSLSSPDHEV KSKTDSASDA LMLGRKQRMK 480 QLASVSLEKG KHSSWHAGNR LPESGRDEAE SSPETERGNL DPARGMTYRC DTLSKHGLFS 540 CVTCGILCYT CVAIIQPTEA AAHHLMSSDY RNFNDWTGNV GGVTATSRDA NAAGSDSSSG 600 WLVKRAPGGL IDVPIESSDR IRKLNNERVG VLSSTKARKE TSSLGLLALN YANSSDSDED 660 EVEANIPVEA CESRQMDFED EVSLRVIDPY ANHRQRRAVS DGRNCQSLDN SIHLESGNHP 720 SGESNTLPDR SRHQLRSHHV GANCIPFSHR GEIANGDGVA PFDNGPMQFT STSDEDSFRI 780 HVFCLQHAVQ VEEQLREVGG VHISLLCHPD YPKLEAQAKK VAEELGRDHF WREISFREAT 840 KEDEEMIQSA LEVEEAIHGN GDWTVKLDIN LFYSANLSRS PLYSKQMPCN FIIYNAFGRS 900 SPDEKSEYTG TGRGSGKQKR AVVAGKWCGK VWMSSQVHPL LAERRDTDEE QQQNNNSISA 960 RVKPEVKSER PCEMTPTIKT VARTGKKRKS RVENKRKSKL LVADDSSVSN VPQQQRKTNL 1020 RSKRIKYETP EPKDEDVDKK RFDSPINDDP VGGPSTRLRK RMPKPSNESL VKPRPAPIKQ 1080 QNESKKAEKG SKVKIPSANS NSKKDPVMKA NTSKKMKDKE GEYHCDLEGC SMSFSTKQEL 1140 SLHKKNVCPV EGCKKKFFSH KYLVQHRRVH MDDRPLKCPW KGCKMTFKWA WARTEHIRVH 1200 TGARPYVCTE TGCGQTFRFV SDFSRHKRKT GHVSKKGRG

Sequence ? help Back to Top

Protein Sequence Length: 1239 aa Download sequence

MAEASGNIDV FPWLKTLPVA PEYHPTLEEF QDPIAYIFKI EKEASKYGIC KIVPPVPAPP  60
KKTALAYLNR SLSARSGSNG GPTFTTRQQQ IGFCPRKHRP VKKPVWQSGE NYTVQEFQAK  120
AKAFEKNYLK KNFKKALTSP LEIETLYWKA TVDKPFSVEY ANDMPGSAFT PKKVGNAVTT  180
LADTEWNMRG VSRAKGSLLK FMKEEIPGVT SPMVYLAMMF SWFAWHVEDH DLHSLNYLHM  240
GAGKTWYGVP RDAAVAFEEV IRVHGYAGET NPLVTFATLG EKTTVMSPEV LLSAGIPCCR  300
LVQNAGDFVI TFPRAYHSGF SHGFNCGEAS NIATPGWLIV AKDAAIRRAS INCPPMVSHF  360
QLLYDLALSL CSRVPKNIRI EPRSSRLKDK KKSEGDMLVK ELFVEDLNCN NYLLHILGEG  420
SPVVLLPRHY SGISIGSNSV AESQLKVNSR FSLSSPDHEV KSKTDSASDA LMLGRKQRMK  480
QLASVSLEKG KHSSWHAGNR LPESGRDEAE SSPETERGNL DPARGMTYRC DTLSKHGLFS  540
CVTCGILCYT CVAIIQPTEA AAHHLMSSDY RNFNDWTGNV GGVTATSRDA NAAGSDSSSG  600
WLVKRAPGGL IDVPIESSDR IRKLNNERVG VLSSTKARKE TSSLGLLALN YANSSDSDED  660
EVEANIPVEA CESRQMDFED EVSLRVIDPY ANHRQRRAVS DGRNCQSLDN SIHLESGNHP  720
SGESNTLPDR SRHQLRSHHV GANCIPFSHR GEIANGDGVA PFDNGPMQFT STSDEDSFRI  780
HVFCLQHAVQ VEEQLREVGG VHISLLCHPD YPKLEAQAKK VAEELGRDHF WREISFREAT  840
KEDEEMIQSA LEVEEAIHGN GDWTVKLDIN LFYSANLSRS PLYSKQMPCN FIIYNAFGRS  900
SPDEKSEYTG TGRGSGKQKR AVVAGKWCGK VWMSSQVHPL LAERRDTDEE QQQNNNSISA  960
RVKPEVKSER PCEMTPTIKT VARTGKKRKS RVENKRKSKL LVADDSSVSN VPQQQRKTNL  1020
RSKRIKYETP EPKDEDVDKK RFDSPINDDP VGGPSTRLRK RMPKPSNESL VKPRPAPIKQ  1080
QNESKKAEKG SKVKIPSANS NSKKDPVMKA NTSKKMKDKE GEYHCDLEGC SMSFSTKQEL  1140
SLHKKNVCPV EGCKKKFFSH KYLVQHRRVH MDDRPLKCPW KGCKMTFKWA WARTEHIRVH  1200
TGARPYVCTE TGCGQTFRFV SDFSRHKRKT GHVSKKGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT04740