PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04739

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 517aa MW: 58219.2 Da PI: 5.1389

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04739	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.1	1.3e-12	177	198	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++tG Ck+G++CkF+H+ OIT04739 177 DCPYFMKTGVCKFGSNCKFNHP 198 7********************8 PP
2	zf-CCCH	31.3	3.6e-10	230	254	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ +G CkyG CkF+H++ OIT04739 230 QIECKYYLTSGGCKYGKACKFNHSR 254 568********************95 PP
3	zf-CCCH	40.8	3.6e-13	275	299	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG CkyG++C+F+H+ OIT04739 275 GEKECPYYMRTGSCKYGSNCRFHHP 299 7899********************9 PP
4	zf-CCCH	19.9	1.3e-06	411	437	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +tG Cky +CkF+H++ OIT04739 411 PGQPDCSYFIKTGDCKYKFNCKFHHPK 437 5789*********************96 PP
5	zf-CCCH	36.1	1.1e-11	459	483	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f++r+G+Ck+G+ CkF H++ OIT04739 459 QTVCSFYSRYGICKFGPACKFDHPE 483 678********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MEEAIEQQPI QNQNQSPKHT QEELGFESQT PQTSLLPSDL NIENPNQNQP NENDDEDEMA 60 MQIICEELRD LVLNQALDKE REKEDLHHRD PEENGKINEN EVENVEGNDE GWGDVGEYGD 120 YGYDDENRSG SVNGNGNEND GEKENGYEGD SKEGGGFNAN NRIKRKFIYP LRPDAQDCPY 180 FMKTGVCKFG SNCKFNHPSR RKYQPLLPIL QQGTKEKGKQ REESQERPGQ IECKYYLTSG 240 GCKYGKACKF NHSREKGSIS PIAEFNFLGL PIRPGEKECP YYMRTGSCKY GSNCRFHHPD 300 PTTVAGADRS SGYNNGGAVP IQAASHPAAS SWSSARALND TAPYVPMMYP PTQGIPSPNT 360 EWNGYQAPVY PTAEKRLPTP PAFAMNNPAP KTNYYPRPLQ PLLVEEYPER PGQPDCSYFI 420 KTGDCKYKFN CKFHHPKSRV SKANSSILNE KGLPLRPDQT VCSFYSRYGI CKFGPACKFD 480 HPENYVGSAS STEYGFDQPQ QSQMSLGWQG RELEVDR

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MEEAIEQQPI QNQNQSPKHT QEELGFESQT PQTSLLPSDL NIENPNQNQP NENDDEDEMA  60
MQIICEELRD LVLNQALDKE REKEDLHHRD PEENGKINEN EVENVEGNDE GWGDVGEYGD  120
YGYDDENRSG SVNGNGNEND GEKENGYEGD SKEGGGFNAN NRIKRKFIYP LRPDAQDCPY  180
FMKTGVCKFG SNCKFNHPSR RKYQPLLPIL QQGTKEKGKQ REESQERPGQ IECKYYLTSG  240
GCKYGKACKF NHSREKGSIS PIAEFNFLGL PIRPGEKECP YYMRTGSCKY GSNCRFHHPD  300
PTTVAGADRS SGYNNGGAVP IQAASHPAAS SWSSARALND TAPYVPMMYP PTQGIPSPNT  360
EWNGYQAPVY PTAEKRLPTP PAFAMNNPAP KTNYYPRPLQ PLLVEEYPER PGQPDCSYFI  420
KTGDCKYKFN CKFHHPKSRV SKANSSILNE KGLPLRPDQT VCSFYSRYGI CKFGPACKFD  480
HPENYVGSAS STEYGFDQPQ QSQMSLGWQG RELEVDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	1e-114	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT04739