PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04555

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 587aa MW: 66969.8 Da PI: 8.5737

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04555	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0014	205	227	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C +rk++L+rH+r++ OIT04555 205 FFCEFCLNFMKRKEQLQRHMRKC 227 67*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MGSIDTSTRA ESGSDPIPTP NSTANGHPAG NGSVHPPAAE STGATAENEP FRKRKGSGVL 60 PLEVGTRVMC RWRDGKYHPV KVIERRKLPC GGANDYEYYV HYTEFNRRLD EWVKLEQLDL 120 NSVETVVDEK VEDKVTSLKM TRHQKRKIDE THVEGHEELD AASLREHEEF TKVKNIATIE 180 LGRYEIETWY FSPFPPEYND CSKLFFCEFC LNFMKRKEQL QRHMRKCDLK HPPGDEIYRS 240 GTLSMFEVDG KKNKVYGQNL CYLAKLFLDH KTLYYDVDLF LFYVLCECDD RGCHMVGYFS 300 KEKHSEESYN LACILTLPPY QRKGYGKFLI AFSVGGKNIN LKVGRKASNK QKESLPSITA 360 PLGKGKQGKL SSAGLNVKTG KVRASKAQKV EPLVKEEGEM SDNDEVYEQF KEVKWMEWCQ 420 DVMADEEKTL KRLQRLQTTS ADLPKDKIRK LLSLFLSLPV LRINELMSKP CAAYELSKKE 480 GKVGTPERPL SDLGMLSYRG YWTRVLLDIL KKHKGNISIK ELSDMTAIKA EDILSTLQGL 540 ELIQYRKGQH VICADPKVLD RHLKAAGRGG LDVDVSKLIW TPYKEQN

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MGSIDTSTRA ESGSDPIPTP NSTANGHPAG NGSVHPPAAE STGATAENEP FRKRKGSGVL  60
PLEVGTRVMC RWRDGKYHPV KVIERRKLPC GGANDYEYYV HYTEFNRRLD EWVKLEQLDL  120
NSVETVVDEK VEDKVTSLKM TRHQKRKIDE THVEGHEELD AASLREHEEF TKVKNIATIE  180
LGRYEIETWY FSPFPPEYND CSKLFFCEFC LNFMKRKEQL QRHMRKCDLK HPPGDEIYRS  240
GTLSMFEVDG KKNKVYGQNL CYLAKLFLDH KTLYYDVDLF LFYVLCECDD RGCHMVGYFS  300
KEKHSEESYN LACILTLPPY QRKGYGKFLI AFSVGGKNIN LKVGRKASNK QKESLPSITA  360
PLGKGKQGKL SSAGLNVKTG KVRASKAQKV EPLVKEEGEM SDNDEVYEQF KEVKWMEWCQ  420
DVMADEEKTL KRLQRLQTTS ADLPKDKIRK LLSLFLSLPV LRINELMSKP CAAYELSKKE  480
GKVGTPERPL SDLGMLSYRG YWTRVLLDIL KKHKGNISIK ELSDMTAIKA EDILSTLQGL  540
ELIQYRKGQH VICADPKVLD RHLKAAGRGG LDVDVSKLIW TPYKEQN

Link Out ? help Back to Top
Ensembl	OIT04555