PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04545
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 282aa    MW: 32376.6 Da    PI: 7.9098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04545genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-132067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  ++ ++G  +W+  +   g+ Rt+k+c++rw +yl
         OIT04545 20 KGAWSPEEDRKLRAYIIKYGIWNWSQMPIFAGLSRTGKSCRLRWVNYL 67
                     79******************99************************97 PP
2Myb_DNA-binding46.58.7e-1573118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE e+ v+  ++lG++ W+tIa++++ gRt++++k++++++l
         OIT04545  73 RGPFSLEEFEIVVKMYQELGNR-WSTIAARLP-GRTDNEVKNFFHTHL 118
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MPRVPPQQQQ KSTNMKEIKK GAWSPEEDRK LRAYIIKYGI WNWSQMPIFA GLSRTGKSCR  60
LRWVNYLSPD VKRGPFSLEE FEIVVKMYQE LGNRWSTIAA RLPGRTDNEV KNFFHTHLKK  120
HLGLKTNAPL KITARRKRVD QTKENAKTNT IKAEERPVLG TTSSLLLPDV SSPCSSAMTC  180
EENQMMDVAN FSQTYLNCYN VSSLVDQSNI NVENTVILES NPEIDENIGV ADSQLRHQFD  240
QYSHACSISD IGTSFNYSID QFDMNSFWLD VIRGSDDHHF IF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-44MYB family protein