PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04454

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 362aa MW: 41425.8 Da PI: 6.9025

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04454	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	183.5	5.1e-57	22	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lppGfrFhPtdee++++yL++kv +k++++ +++evd++k+ePwdLp+k+k +ekewyfF++rd+ky+tg r+nratksgyWkatgkdke+++ kg lvg OIT04454 22 LPPGFRFHPTDEEIITCYLREKVMDKRFTA-IAVAEVDLNKSEPWDLPAKAKMGEKEWYFFCQRDRKYPTGMRTNRATKSGYWKATGKDKEIYKVKGCLVG 121 79***********************999.88***********99999******************************************** PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvfykgrapkgekt+Wvmheyrl OIT04454 122 LKKTLVFYKGRAPKGEKTNWVMHEYRL 148 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGSCMQVINE EADLHRDDIL DLPPGFRFHP TDEEIITCYL REKVMDKRFT AIAVAEVDLN 60 KSEPWDLPAK AKMGEKEWYF FCQRDRKYPT GMRTNRATKS GYWKATGKDK EIYKVKGCLV 120 GLKKTLVFYK GRAPKGEKTN WVMHEYRLHG KLSFHKPAMD EWVICKVFHK NIGVGRGSLF 180 MEDLLDSPSS LPCLIEIPKS SDVRDELNIR AATIVGRKPL DGNHLISSSV TASTFDEIHS 240 SPYFSTDIFN NYAFKQQQQQ QLLREDEKSY GLFVPTHYIF TGINDYEHNN QLASSSNSSF 300 NHDQSLPPNS KISDYSLERQ QLSSNNKSMI SLSQDTNEIS SVIQKQGFDS TLAADLDSIW 360 NY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGSCMQVINE EADLHRDDIL DLPPGFRFHP TDEEIITCYL REKVMDKRFT AIAVAEVDLN  60
KSEPWDLPAK AKMGEKEWYF FCQRDRKYPT GMRTNRATKS GYWKATGKDK EIYKVKGCLV  120
GLKKTLVFYK GRAPKGEKTN WVMHEYRLHG KLSFHKPAMD EWVICKVFHK NIGVGRGSLF  180
MEDLLDSPSS LPCLIEIPKS SDVRDELNIR AATIVGRKPL DGNHLISSSV TASTFDEIHS  240
SPYFSTDIFN NYAFKQQQQQ QLLREDEKSY GLFVPTHYIF TGINDYEHNN QLASSSNSSF  300
NHDQSLPPNS KISDYSLERQ QLSSNNKSMI SLSQDTNEIS SVIQKQGFDS TLAADLDSIW  360
NY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	8e-97	NAC family protein

Link Out ? help Back to Top
Ensembl	OIT04454