PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04319
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 331aa    MW: 36769.4 Da    PI: 9.6417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04319genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.4e-13259304655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  OIT04319 259 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 304
               689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MESEYKNSTT SGLLRFSSAP SYFLANFTDK VVKNGNYKNG LSSKLNLGSS LGLNNSQLPP  60
PYPRHNSMEK GYKVVSSMEM DHQRQNKLGS NLMRQNSSPA GLFSHLSSQN GYVVGGYKMV  120
NGANGDTVSP SSLGMLSRIN EVENESSSIT TSLDDDKSGN GNSETQYYNS GLPFASWSEA  180
SHFQESFTGH KREMLDNEEK LFANSQVGQL GNQPPILSHH LSLPKTPAEI AAMEKLLQLQ  240
GTVPCKIRAK RGFATHPRSI AERVRRTRIS ERMRKLQELV PNMDKQTNTA DMLDLAVDYI  300
KDLQKQYKTL TDCRANCKCA AMQKQVSNQR V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-80bHLH family protein