PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT04249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 273aa MW: 30057.1 Da PI: 8.4911 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++ +G g+W++ ++ g+ R++k+c++rw +yl OIT04249 14 KGAWTKEEDQRLVNYIHSHGEGCWRSLPKAAGLQRCGKSCRLRWINYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 59 | 1e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ OIT04249 67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MGRSPCCEKA HTNKGAWTKE EDQRLVNYIH SHGEGCWRSL PKAAGLQRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 LDPHTHQPLN TAATTAATAT ATKNICLDFR NTSVAATPLS LNDENPTNYS SSLEEETKCS 180 SSTTEERPPP LEPAAAPVAA TQKSSGEVMI NLELSIGLPF QAMVAQRRPT AAAPVAATAL 240 VEKAVCLCWQ IGSQSGQQFC GKCQTTNGFY RCC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-86 | MYB family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT04249 |