PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT04246
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 265aa    MW: 31332.6 Da    PI: 5.5933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT04246genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.7e-141148340
              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
    SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
              i+++ +r+ tf kR++ ++KK +E+S+LCd+++++ii 
  OIT04246 11 IQDHKKRNSTFQKRKACLIKKISEISILCDIKACMIIS 48
              8999*******************************984 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MGRSKIKMEL IQDHKKRNST FQKRKACLIK KISEISILCD IKACMIISEG NNYEEIWPND  60
PNEVQELINL YKNQPIEDRN KRENSLCSFL ENEKKKAEIK MAKLKTKIKT EKYPTWDSRF  120
NYLSEKELRN LAGVLEKKME NAKEKSEFLK SYRNINQDSN QEIWDYPELM DNFNQSNPQP  180
ISYMDNQFFQ ELTADKVNSM RILDNVDLNV GDYEFGNLDY MKIEAEDWLV NNGIIGSSSR  240
MQPMELNQYS FISSRSTQIP YGYFQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-17M-type_MADS family protein