PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT04236

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 285aa MW: 30057.1 Da PI: 6.4324

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT04236	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	88.1	1.9e-27	1	87	24	112
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...................kaaksaakskksqksa 104 ++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ + OIT04236 1 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfihggattmlgfH--------------- 86 9**********************************************999777777777774443344444455444444444431............... PP TCP 105 asalnlak 112 + OIT04236 87 -------H 87 .......2 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNVSLRSSG 60 TTISAPPSKS APLFIHGGAT TMLGFHHQLS NGSFGQDPDE NNYMKKRFRE DTSGATSPSG 120 DKPERTVGQA HEPGSDSKPG SSQTSSFIPA PAMWAVAPAG GNVGNAFWML PVSGGTSSTT 180 ASVGVAQPDH QLWRSRIGGF EFPGGGRFSP VQLGSMVLQQ SQPVQQLGLG VTETNMGMLS 240 SMNNAYNSSG NNRVDLGMNL EQHHHHQNQT QGSDSGDENH KDSQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-49	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT04236