PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03983
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family YABBY
Protein Properties Length: 208aa    MW: 23160.3 Da    PI: 7.5879
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03983genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2152.3e-66131722170
     YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102
               d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll         l +a++h+++++  + ++ l+   +++    ++++++    ++    
  OIT03983  13 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLP-----GLLLPSANHHFGHTYFSPSHNLLEEIANATPNFLMNQSTTDFVLPT---- 104
               577899***************************************8.....4445566677788777665544444444444444444333333333.... PP

     YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
               +   +++pr+p ++rPPekrqrvPsaynrfikeeiqrika+nPdishr+afsaaaknWahfP+i fgl
  OIT03983 105 RPGFDDLPRPPVINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHRDAFSAAAKNWAHFPHIQFGL 172
               3456799**999******************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MSSSTPNSTL SLDHLPPSEQ LCYVHCNICD TVLAVSVPCT SLFKTVTVRC GHCTNLLPGL  60
LLPSANHHFG HTYFSPSHNL LEEIANATPN FLMNQSTTDF VLPTRPGFDD LPRPPVINRP  120
PEKRQRVPSA YNRFIKEEIQ RIKAGNPDIS HRDAFSAAAK NWAHFPHIQF GLMPDQTVKR  180
ANVRQQDGED VLMKDGLFNS ANVSVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-77YABBY family protein