PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03982

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 270aa MW: 30831.9 Da PI: 8.6468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03982	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	114	133	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ OIT03982 114 FSCHICHKTFNRYNNLQMHM 133 89*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MERLYLASSS SVENQIEPFD FFAEKTQNAF EFLTLSQPSE KEIRLSNDQE NPNSCNWLDK 60 EDDVTVALHI GLPNFNNTST NIPTDHTKGD GNMAAGTQYW IPTPSQILVG FTHFSCHICH 120 KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCEEGCKNN INHPRAKPLK 180 DFRTLQTHYK RKHGTKRFAC RKCGKCLAVK GDWRTHEKNC GKRWLCICGS DFKHKRSLKD 240 HIASFGEGHG PCPPNSFEGV EVQKKYSVFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-111	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT03982