PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT03821
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 501aa    MW: 57127.5 Da    PI: 4.6088
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT03821genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.91e-831184862373
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
               ++lLl  Aea+++g+l la+ ++ rl+++ s + +    p+ Rla yft++L  + ++   + ++ l  +++ + +ss++++a+++++e+sP++kf+h+ta
  OIT03821 118 TDLLLMGAEAIEAGNLDLASVVVLRLNNILSDEENrensPLDRLALYFTQGLLYKSLS---TSSHELLNQNQYQPESSSSITAFQMLQEISPYVKFAHFTA 215
               5789999*********************96555433445************9766555...44444444444445689999******************** PP

      GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkp 198
               NqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R     slRiT+ +  +++++ ++++tg+rL++fA+++++pf f+ +  ++ edl  e++  v++
  OIT03821 216 NQAILEATKGSQQVHILDFDIMEGIQWPPLMVDLVERGYTNSSLRITAAVV-DKNNSFQVQKTGKRLEEFANSINLPFIFDHVFLTKEEDL--ENIqGVES 313
               ***********************************************9888.66799************************9866665555..77724666 PP

      GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgrei 294
               + +l+ n++++  +++++  sl +   ++ + +++lsPk+vv+ve+e    ++  + sF+e f+eal++y+++ ds+  +++     + +++E+e+lg +i
  OIT03821 314 HNNLIANVMIHQLHIPQRGSSLIK---TFFNGLRRLSPKIVVLVEEElfnlTKIPTMSFVEFFCEALHHYTTISDSILGGFGGGYkLALRVIEKEFLGIRI 411
               9*********99999977777777...********************7554455778********************6666665538999*********** PP

      GRAS 295 vnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                ++v +  +e+ er    ekW+e l +  GF+++p+s++++ qak+l++ ++  gy v++e+  l l+Wk+rpL+++S W
  OIT03821 412 LDCVRQFPSEKSER----EKWSEGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTTASIW 486
               *********96666....56***997658***********************.89************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    
MECENFQPSY INPFLEYSTL ETTTFPWQNS SINPHCSIQD FVTVVNDVDI QDYFQNDFDF  60
IDQDVDFHVQ NSQNFSLFSS QVQVQEDTDL LNEDQKLRIY SPELKLLQDQ LMEETSITDL  120
LLMGAEAIEA GNLDLASVVV LRLNNILSDE ENRENSPLDR LALYFTQGLL YKSLSTSSHE  180
LLNQNQYQPE SSSSITAFQM LQEISPYVKF AHFTANQAIL EATKGSQQVH ILDFDIMEGI  240
QWPPLMVDLV ERGYTNSSLR ITAAVVDKNN SFQVQKTGKR LEEFANSINL PFIFDHVFLT  300
KEEDLENIQG VESHNNLIAN VMIHQLHIPQ RGSSLIKTFF NGLRRLSPKI VVLVEEELFN  360
LTKIPTMSFV EFFCEALHHY TTISDSILGG FGGGYKLALR VIEKEFLGIR ILDCVRQFPS  420
EKSEREKWSE GLYSLKGFRQ IPMSSSNVRQ AKHLVSLFSG GYWVQNEHCK LALCWKSRPL  480
TTASIWVPTS SSSSPSTSIS F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-48GRAS family protein