PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03795

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 830aa MW: 95469.2 Da PI: 6.7024

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03795	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	37.3	9.2e-12	125	204	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+e+ + F ++k++s+k+ +++ ++ C ++ k+++++ +++r +C+a+++ +e++g w+v+k++++HnH+l p OIT03795 125 DFYKEHTRLSDFCIVKRTSNKK-GGDTVRYVQYGCDRSRKPRNKH----------VTKRKNCRARINEILEENGSWRVSKVVKKHNHQLEP 204 6**************99998.5566999**998887765..........5599*****9*****************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence
MNTNRETSLD PLNPNNSLET RSDQLRNALH ISLGLNSDDS LMNEDESIDI DSDGNFNDGE 60 NPVDDAAAPA AAAAADDDDD YDGHYLEEEG EVGEDREMPN EFNEEDLIIG PITGMRFSSK 120 DVLFDFYKEH TRLSDFCIVK RTSNKKGGDT VRYVQYGCDR SRKPRNKHVT KRKNCRARIN 180 EILEENGSWR VSKVVKKHNH QLEPALSRLM AGHRSLSKSL KRTLAAKDIA GLRPSKNIRV 240 AELQEGDAQS LLKFFSDMQQ KDREFYYSVD VDSFGRLRNV VWVHSHSKVA YEEFHDVICL 300 DTTYLVNRYN MPFASFVGVN QHRQSILLGC ALMSSEDITS YKMVLSTWLG ALNNVHPLAI 360 MTDQCDSIKA AISAMMPNTI HRYCIWHIFA KLPTKLSGVL DGKIAKAEFK ALVLDSINVA 420 EFERRWTDFI EKYNLEERDW FYKLYLEKEK WVPVYLNDHF WAGMLSTQRS EGMHAFFDGF 480 INRQSTLKLF VQQYELAIRA KFEKELEAEY RSRCFEPKCL SEFAWEENFQ TCYTREVFEF 540 FQVQLRKLYH CEISSPEDHQ ATTGVENYII SDYSFRSLNT RDPFVFAVEY TPIGEYLSCS 600 CKWFETRGIL CCHILKVLSH KRINNVNERY ILRRWRKDVV RPHLKRFFLG GYPRMTSEYM 660 MYRELLKHFE RVCDIALDTE VMRRYIKYHL NRLEHDLLNW DDDQMIIPDW EFEDTHDASR 720 GRPRLNRYRG RIDSYFRSSQ TAGGSGVRGN RRGRGGGRGG GRGGGRGVGR GGGKSGGRGG 780 GRGRGRGGGR GGGNTGLAEG IEQDDATVQA HSSLPDLNDE ADWEIEDLTV

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence

MNTNRETSLD PLNPNNSLET RSDQLRNALH ISLGLNSDDS LMNEDESIDI DSDGNFNDGE  60
NPVDDAAAPA AAAAADDDDD YDGHYLEEEG EVGEDREMPN EFNEEDLIIG PITGMRFSSK  120
DVLFDFYKEH TRLSDFCIVK RTSNKKGGDT VRYVQYGCDR SRKPRNKHVT KRKNCRARIN  180
EILEENGSWR VSKVVKKHNH QLEPALSRLM AGHRSLSKSL KRTLAAKDIA GLRPSKNIRV  240
AELQEGDAQS LLKFFSDMQQ KDREFYYSVD VDSFGRLRNV VWVHSHSKVA YEEFHDVICL  300
DTTYLVNRYN MPFASFVGVN QHRQSILLGC ALMSSEDITS YKMVLSTWLG ALNNVHPLAI  360
MTDQCDSIKA AISAMMPNTI HRYCIWHIFA KLPTKLSGVL DGKIAKAEFK ALVLDSINVA  420
EFERRWTDFI EKYNLEERDW FYKLYLEKEK WVPVYLNDHF WAGMLSTQRS EGMHAFFDGF  480
INRQSTLKLF VQQYELAIRA KFEKELEAEY RSRCFEPKCL SEFAWEENFQ TCYTREVFEF  540
FQVQLRKLYH CEISSPEDHQ ATTGVENYII SDYSFRSLNT RDPFVFAVEY TPIGEYLSCS  600
CKWFETRGIL CCHILKVLSH KRINNVNERY ILRRWRKDVV RPHLKRFFLG GYPRMTSEYM  660
MYRELLKHFE RVCDIALDTE VMRRYIKYHL NRLEHDLLNW DDDQMIIPDW EFEDTHDASR  720
GRPRLNRYRG RIDSYFRSSQ TAGGSGVRGN RRGRGGGRGG GRGGGRGVGR GGGKSGGRGG  780
GRGRGRGGGR GGGNTGLAEG IEQDDATVQA HSSLPDLNDE ADWEIEDLTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	754	762	RGGGRGGGR
2	754	763	RGGGRGGGRG
3	758	766	RGGGRGGGR
4	758	767	RGGGRGGGRG
5	762	771	RGGGRGGGRG
6	778	787	RGGGRGGGRG
7	782	791	RGGGRGGGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-86	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT03795