PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT03764

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 284aa MW: 32797.1 Da PI: 6.952

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT03764	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.4	1e-17	74	125	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k OIT03764 74 RRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 125 57899**********************************************9 PP
2	HD-ZIP_I/II	126.1	1.6e-40	72	163	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k rrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++a+k+en++L +++++L++e+++ OIT03764 72 KIRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEAVKAENDSLLAHNQKLHAEIMR 163 669************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MTCTNEMAFF PPNFMLHTSH QDDHQDFQGV GSFLGKRTMS FSGMEANNNC EKKNGEEDLS 60 DDCSHEAARE KKIRRLNMEQ VKTLEKNFEL GNKLEPERKM QLARALGLQP RQIAIWFQNR 120 RARWKTKQLE KDYDVLKRQF EAVKAENDSL LAHNQKLHAE IMRLKNGEQQ PTEISINLNK 180 ETEGSSSNRS ENSAEMMKLD ISMTPASIDS PILASTTHQP ITRRSRLLFP PTMRPNGVTQ 240 QVPQSNMKLM DQTVREETLP NMFLCAIDDQ SPGFWPWLEQ SHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-102	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT03764