PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT03711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 117aa MW: 13721.2 Da PI: 10.4287 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.9e-31 | 57 | 107 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ + rqvtfskRrngi+KKA+ELSvLCdaevaviifs++g+lye+ss OIT03711 57 KRIEDATSRQVTFSKRRNGIMKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 107 79***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence |
SSKIPFLGFF CFWVKFLMLH SFQACSRSCS VPKLNTNKLS QFLDILWKMV RGKVQMKRIE 60 DATSRQVTFS KRRNGIMKKA YELSVLCDAE VAVIIFSQKG RLYEFSSSRY VCFYFLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 2e-32 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT03711 |